| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2332 |
|---|
| Symbol | |
|---|
| ID | 4078322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2452530 |
|---|
| End bp | 2453345 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638007654 |
|---|
| Product | cytochrome c oxidase, subunit III |
|---|
| Protein accession | YP_614326 |
|---|
| Protein GI | 99082172 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.938653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCATG CAAAAAACCA CGATTTCCAC ATTCTGCCGC CTTCTATTTG GCCGCTTCTG
AGCTCGCTTG GCGCCTTCGT CATGCTGTTT GGCGCGGTGC TCTGGATGCA CGACTACACC
GCCTGGCTGT TCTGGGCCGG TTTGGTTGCG GTGCTCTACT CTGCCTTCTG CTGGTGGTCT
GAGACCATTG CGGAAAACAA GGCAGGCGAT CACACGCCGG TTGTTCTGAT CGGCCTGCGC
TACGGCTTCA TCCTGTTTGT GATGTCCGAA GTCATGTTCT TCTTCGCGTG GTTCTGGTCG
TTCTTCAAAC ACGCCATGTA CCCGATGGAA GAATACGTCG GCACCGAATA TGTCGCGCCC
GACATCTACC CGGTTGACGC CTTCCACCTG CCGCTCATCA ACACGCTGGT GTTGCTGCTC
TCTGGCTGTG CTGTGACCTG GGCGCACCAC GCGCTTGTGC ACGACAATGA CCGCAAGGGT
CTGGTGAACG GCCTCGCCAT CGGTATCGCA CTTGGCATCT TCTTCACTGC GCTGCAGGCC
TATGAATATG TGCACCTGCT GCACGAAGGC TGGGAGTTTG GCGGCGACGA GTTCTACTCC
AACTTCTTCA TGGCCACCGG TTTCCACGGC TTCCACGTGA TCCTCGGCAC CATCTTCCTG
ATCGTGTGTC TGATTCGCGC GATGCGGGGC GATTTCACGC CGAAGTCCCA CGCGGGCTTT
GAGATGGCGG CCTGGTACTG GCACTTCGTT GACGTTGTGT GGCTGTTCCT CTTCGTGGCC
GTCTACATCT GGGGCACCGC CGGTCTGGCG CACTGA
|
|---|
| Protein sequence | MAHAKNHDFH ILPPSIWPLL SSLGAFVMLF GAVLWMHDYT AWLFWAGLVA VLYSAFCWWS
ETIAENKAGD HTPVVLIGLR YGFILFVMSE VMFFFAWFWS FFKHAMYPME EYVGTEYVAP
DIYPVDAFHL PLINTLVLLL SGCAVTWAHH ALVHDNDRKG LVNGLAIGIA LGIFFTALQA
YEYVHLLHEG WEFGGDEFYS NFFMATGFHG FHVILGTIFL IVCLIRAMRG DFTPKSHAGF
EMAAWYWHFV DVVWLFLFVA VYIWGTAGLA H
|
|---|
| |