| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2315 |
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| Symbol | |
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| ID | 4078305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2436816 |
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| End bp | 2437457 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007637 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_614309 |
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| Protein GI | 99082155 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTGG TCGTGACAGG CAGCAGCCGC GGTATCGGGC GCGAGTTGAA GACAAGGCTG
TCGGAGCGCG GGGACCGGGT GACGGGCACC TCGCGCGATC ATTCCTCGGG CACGCGCCTT
GATGTGAGCG ATCCGGGCCA GCAGGCGCGC TTTGCGGCAC AGATCAAAGG CGACCCGGTG
GATCTCTTGA TCTGCAACGC GGGGGTTTAT CTCGATAAAT CCATGGCGCT CAAGGACTAT
ACGGCAGAGG TTTGGGCAAA ATCGCTGGCG GTGAACGTCA CGGGCGTGTT CCTGACCGTG
CAGGCGATGC TGCCCAATCT CAAGCTGGCC GACGAGCCCA AGATCGCGAT CATCTCTTCG
CAGATGGCCA GCCACGCGCG CGCGCCGGGA GGCTCCTATG CCTATCGCGC GTCCAAGGCG
GCGGCGCTCA ACATCGGGCG TAACCTGGCC ACCGACCTCA AGCCTGAAGG CATTGCCGTG
GGGATCTATC ATCCCGGATG GGTGCGCACT GATATGGGGG GTCAGGACGG TGACATCACC
GTCGAGGAAA GCGCGCTGGG GTTGATCAAC GAATTTGACG TGCTGTCGCT GGACACGACG
GGATGTTTTC ACACCTGGGA TGGTCAGGTT CACGCCTACT AG
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| Protein sequence | MHVVVTGSSR GIGRELKTRL SERGDRVTGT SRDHSSGTRL DVSDPGQQAR FAAQIKGDPV
DLLICNAGVY LDKSMALKDY TAEVWAKSLA VNVTGVFLTV QAMLPNLKLA DEPKIAIISS
QMASHARAPG GSYAYRASKA AALNIGRNLA TDLKPEGIAV GIYHPGWVRT DMGGQDGDIT
VEESALGLIN EFDVLSLDTT GCFHTWDGQV HAY
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