| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2271 |
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| Symbol | |
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| ID | 4078455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2385286 |
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| End bp | 2387814 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638007593 |
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| Product | hypothetical protein |
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| Protein accession | YP_614265 |
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| Protein GI | 99082111 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.276468 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.445258 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA AATCGTCTTT TCGCCTCGCC TGGCGCTTTG CACTGCGCGA ACTGCGCGGT
GGGTTGCGCG GCTTTCGCCT CTTCCTTGCA TGTCTCGCCC TTGGGGTGGG TGTCATTGCC
GCCATCGGTT CGATCCGCGC CTCCATCGAG GCGGGGCTCT CGCGCGAGGG GGCAAGCCTA
CTTGGCGGCG ATGCGGAGCT GACCTTCACC TATCGCTTTG CCAACCCGGA CGAGATCGCC
TGGATGGACG AGATCGCCCG CGACCGCTCC GAAGTTGTGG AGTTTCGCTC CATGGCCGTG
GTCGGCGACG AGCGGGCGCT GACGCAGGTA AAATCCGTCG ACGCGGCCTA TCCGCTGCGC
GGTGACTTTC GCCTCATGTC GGGCCAACCG CTTCATGAAG CGCTCGCAGC GGCAGATGGC
CGCCCCGGCG CGGTGATGGA ACGGGTGCTG GCCGACCGCC TGGGTCTGAG CGAGGGCAGC
GTCTTTCGCC TTGGCACACA GGAATTTCGC CTGAGCGGCC TCCTTGAGTG GGAACCCGAT
GCGGCGGGAT CGGGGTTCTC CATCGGGCCG CGCACCCTGG TGCGTACCGA GGCCCTGGCG
CAATCCGGCC TCTTGGCGCC GGGGACGCTC TATTCCACCA AATACCGGCT GACTTTGCCG
CCCGATGCAG ATCTGGCGGC ACTGGAACAG GACGCCCGCG CCCGATTCGA AGAGAGCGGC
ATGCGCTGGC GCGATGCCCG CAACGGCGCA CCGGGGATTG CACGTTTCGT AGAGCGTCTG
GGCGCGTTTC TGGTGCTTGT GGGTCTGTCG GGGCTTGCGG TCGGCGGTGT CGGGGTCTCA
ACAGCGGTGC GCGCCTATCT CGCCACCAAG ACCGAGACCA TCGCCACGCT GCGCACCCTT
GGTTCAGAGC GGCGGGTCAT TTTCCTGACC TACTTTCTGC AGATCGGCGT GCTATCGCTC
TGCGGGATCA CGCTGGGGCT GATATTGGGC GGGGTGGGTC CGCTGTTGCT CGGTCCGTTG
ATTGCAGCAC AGTTGCCGTT TCCGGCGGTT TTCTCGATCT ACCCTGCGGC GCTTGCGGAA
TCCGCACTCT ATGGTGTGTT GACCGCACTG TTGTTCACCC TCTGGCCACT GGCCCGCACG
GAGCGCATCC GCGCAGCCGC TCTTTATCGT GATGCGGTGA GCGGCGGGCT GCAATGGCCC
GCCCCGCGCT ACATTCTGGC CACGCTGGCG ACGCTCGGCC TGCTGATTGC TGCCGCCGCG
CTATTCAGTG GCGCGCCAGA ACTGGCGCTC TGGACGGCGG GCGGGTTGAT CGGCGCGCTT
GTGGTGCTGC TGATTGCAGG AGCCGCCATC GGAGGTCTGG CGCGCATGGG CAATCGTATG
GCGCGGGGGC GTCCCGCACT GCGTTGGGCG CTGGCCTCCA TCGCCTCGGC GCGCGATGGC
GCCATGCCTG CGGTGCTGGC ACTGGGTCTG GGGCTGACGG TGCTGGCCGC AATCGGGCAG
ATCGACGGCA ACATGCGCCG CGCCATCGCC GGGAACCTTC CGGATGTGGC TCCTTCCTAT
TTCTTTGTCG ATATTCAGCG CGACCAGATG CCCGCCTTTC TTGAGCGCGT CGAAGGCGAC
CCGCAGGTGA GCAAGGTCGA CAATGCGCCG ATGCTGCGTG GTGTCATCAC CCGCATCAAC
GACCGCCCGG CCAAAGAGGT TGCGGGCGAC CACTGGGTGA TCCGCGGGGA TCGCGGCGTC
ACCTATGCCG CTGCCAAACC CGCAAGCACC AATGTCACGG CAGGCGCCTG GTGGCCCGAG
GATTACACCG GGCCACCACA GATCTCCTTT GCTGCCGAAG AGGCCGAGGA AATGGGTCTC
GCGCTCGGAG ACACGCTGAC GGTGAATGTG CTGGGACGTG ACATCACCGG CACCATCACC
AGTTTCCGTG AGGTGGATTT CTCCAATGCG GGGATGGGCT TTGTGCTCAC CATGAACGAA
GCCGCCCTGC GTGGCGCGCC CCATAGCTAT ATTGCAAGCG TCTATGCCGA AGAGGACGCG
GAGGCCGCTA TCCTGCGCGA TGTGGCCCGC GAGATGCCGA ATATCACCGC GATCCGGGTG
CGGGACGCGA TCAACCGGGT GTCCGAGATC CTCGGCCAGT TGGCCACCGC CACCGCCTAT
GGCGCTGCGG CAACGCTGTT CACAGGGTTC CTGGTGCTGC TCGGGACAGC GGCAGCAGCA
GAGCCTGCGC GACGCTACGA GGCGGCCCTG TTGAAAACAC TGGGCGCGCC GCGTGGTCAG
ATCCTGCGCA GCTTTGCGCT GCGCTCCGCG ATCCTCGGGG CGGCTGCGGG GGGCGTGGCG
CTTCTGGCAG GCATCCTTGG GGCCTGGTCG GTGAGCCACT TTGTGCTGGA GACAGACTAT
GTTGTGATCT GGCCCAATGC GGTCGGGGTG ATCGGCGGCG GCATTCTGGT GACACTCTTT
GCGGGACTGG CCTATGCGCT GCGCCCGCTG GCGGCGCGAC CGGCTCGGGT CTTGCGGGCG
CGCGACTAG
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| Protein sequence | MSQKSSFRLA WRFALRELRG GLRGFRLFLA CLALGVGVIA AIGSIRASIE AGLSREGASL
LGGDAELTFT YRFANPDEIA WMDEIARDRS EVVEFRSMAV VGDERALTQV KSVDAAYPLR
GDFRLMSGQP LHEALAAADG RPGAVMERVL ADRLGLSEGS VFRLGTQEFR LSGLLEWEPD
AAGSGFSIGP RTLVRTEALA QSGLLAPGTL YSTKYRLTLP PDADLAALEQ DARARFEESG
MRWRDARNGA PGIARFVERL GAFLVLVGLS GLAVGGVGVS TAVRAYLATK TETIATLRTL
GSERRVIFLT YFLQIGVLSL CGITLGLILG GVGPLLLGPL IAAQLPFPAV FSIYPAALAE
SALYGVLTAL LFTLWPLART ERIRAAALYR DAVSGGLQWP APRYILATLA TLGLLIAAAA
LFSGAPELAL WTAGGLIGAL VVLLIAGAAI GGLARMGNRM ARGRPALRWA LASIASARDG
AMPAVLALGL GLTVLAAIGQ IDGNMRRAIA GNLPDVAPSY FFVDIQRDQM PAFLERVEGD
PQVSKVDNAP MLRGVITRIN DRPAKEVAGD HWVIRGDRGV TYAAAKPAST NVTAGAWWPE
DYTGPPQISF AAEEAEEMGL ALGDTLTVNV LGRDITGTIT SFREVDFSNA GMGFVLTMNE
AALRGAPHSY IASVYAEEDA EAAILRDVAR EMPNITAIRV RDAINRVSEI LGQLATATAY
GAAATLFTGF LVLLGTAAAA EPARRYEAAL LKTLGAPRGQ ILRSFALRSA ILGAAAGGVA
LLAGILGAWS VSHFVLETDY VVIWPNAVGV IGGGILVTLF AGLAYALRPL AARPARVLRA
RD
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