| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2238 |
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| Symbol | |
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| ID | 4077305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2351314 |
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| End bp | 2352930 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007560 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_614232 |
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| Protein GI | 99082078 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.576533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACGC TCGGAGCATC CGCACATACC GATACATTCA CCCGCGACGC CTTGCCGCCT
GCGGATCAGT GGCCCGATTT TATGCTTGAG GGGTTTGAGT ATCCCGAGCA TCTGAACGCG
GGCGTCGAAC TGACCGATGC GATGGTGGAG CGCGGCTTTG GCGACCGTAC TGCACTGATC
GGCAACGGGC GGCAGCGCAC CTATAAGGAG TTGGCCGACT GGACCAACCG GCTGGCGCAT
GCGCTGGTTC AGGATCTGGG CGTCAAACCG GGCAATCGCA TCCTGATCCG TTCTGCGAAT
AATCCGGCGA TGGTGGCCTG CTGGCTCGCC GCCACCAAGG CGGGCGCGGT GGTGGTCAAC
ACCATGCCGA TGCTGCGCGC TGCAGAGCTA AAAAAATATG TCGAGAAGGC GCAGATCCAG
TTTGCGCTCT GTGATACGCG GCTGATGGAG GAGATGGAGG CCTGCGCGGC CCAGTGCGAT
GTGCTTGAGC GTGTCGTGGG CTTTGATGGG ACCTCCAACC ACGACGCTGA ACTTGACCGG
CTGGCACTGG AGAAACCGGT GCAGTTTGAG GCGGTAGAGA CCGGACGCGA TGATGTGGCG
CTCCTGGGGT TCACCTCCGG GTCGACCGGA GAGCCCAAGG CCACCATGCA TTTTCACCGC
GATCTATTGA TCATTGCCGA TGGCTATGCC CGTGATGTGC TCAATGTGGT GCCGGAGGAC
ATTTTTGTGG GATCTCCGCC ACTTGCCTTT ACCTTCGGGC TTGGCGGGCT AGCGATTTTC
CCGTTACGGT TCGGGGCAAC CGCGACGCTT TTGGAACAGG CCACACCGCC CAATATGATC
GAGATCATCG AGAAATACCG CGCGACCGTG TGCTTTACTG CGCCGACCGC CTATCGCGTG
ATGCTCTCGG CGATGGAAGA GGGCGCGGAT CTGAGCAGCC TGCGCGCCGC TGTCTCTGCG
GGCGAGACCC TGCCCAAACC TGTCTATGAC GATTGGATGG CCAAGACCGG CAAGCCGATG
CTCGATGGGA TCGGCGCGAC CGAGATGCTG CATATCTTTA TCTCCAACCG GTTTGACGAC
CACCGTCCTG CCTGCACCGG CAAACCTGTG CGCGGCTACG AGGCCAAGGT GGTCGATGAC
GAAGGCAACA CTGTGCCCGA TGGTGAAGTT GGCCGCCTTG CGGTGCGCGG GCCGACGGGC
TGTCGCTACC TTAATGATGA TCGGCAGGCG GGCTATGTCG CGGATGGTTG GAACATCACC
GGCGACAGTT TCATCCGCGA TGCGGACGGC TATTTCCATT TTGCTGCGCG CAACGACGAT
ATGATCGTCT CGGCGGGCTA CAATATCGCT GGCCCCGAGG TGGAAGCTGC GCTTCTGGCG
CATGCGGCGG TGGCGGAATG TGCGGTCATT GGCGCCCCGG ACGAGGCGCG CGGACATATC
GTGCAGGCGC ATATCGTGCT CAACGCGGAC TTCGCGCCGT CTGAGACGCT CATCAAGGAT
CTGCAGAGCC ACGTGAAGGC GACCATTGCG CCCTATAAAT ATCCCCGCTC GATCATTTTT
GCCGAAGAAC TGCCAAAGAC GCAGACCGGC AAGATTCAGC GGTTCCGGCT TCGTTGA
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| Protein sequence | MMTLGASAHT DTFTRDALPP ADQWPDFMLE GFEYPEHLNA GVELTDAMVE RGFGDRTALI
GNGRQRTYKE LADWTNRLAH ALVQDLGVKP GNRILIRSAN NPAMVACWLA ATKAGAVVVN
TMPMLRAAEL KKYVEKAQIQ FALCDTRLME EMEACAAQCD VLERVVGFDG TSNHDAELDR
LALEKPVQFE AVETGRDDVA LLGFTSGSTG EPKATMHFHR DLLIIADGYA RDVLNVVPED
IFVGSPPLAF TFGLGGLAIF PLRFGATATL LEQATPPNMI EIIEKYRATV CFTAPTAYRV
MLSAMEEGAD LSSLRAAVSA GETLPKPVYD DWMAKTGKPM LDGIGATEML HIFISNRFDD
HRPACTGKPV RGYEAKVVDD EGNTVPDGEV GRLAVRGPTG CRYLNDDRQA GYVADGWNIT
GDSFIRDADG YFHFAARNDD MIVSAGYNIA GPEVEAALLA HAAVAECAVI GAPDEARGHI
VQAHIVLNAD FAPSETLIKD LQSHVKATIA PYKYPRSIIF AEELPKTQTG KIQRFRLR
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