Gene TM1040_2180 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_2180 
Symbol 
ID4076779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2290874 
End bp2291602 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content63% 
IMG OID638007502 
ProductNUDIX hydrolase 
Protein accessionYP_614174 
Protein GI99082020 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0550608 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGCGA CCGGTGCAAG CGACACAAGC ATAGACAAGA CCACGATTCG CGATGCCGCG 
ACGGTGATCG TGGTGCGCGA TAGCAAAAGC GACGACCCCA AGGTCCTGAT GGGCCAGCGT
GGCGCCAAGG CCGCGTTTAT GCCCAACAAA TTTGTGTTCC CCGGTGGCGC AATGGATCTG
GGCGATCGCG AGATTGCCCT GGCCGGTGAC ATTGGTGCGC CCTGCCGGAA CCGCCTGCAA
GAAGATGGGG GCGCAGAGGT CTGGCGCGCG CTCTGCGTGG CCGCAGCCCG TGAACTCTGG
GAGGAAACAG GGCTGATCCT TGGACAGCCG GGGTATTGGC CCGCCGAGGT GCCCAAGGAT
TGGCAGAGCT TTGCCGCAAC GGGCCATGTT CCGGATGCTT CGGCGCTGAC ATTCGTGTTT
CGCGCCCTGA CCCCGCCGGG TCGCCCGCGC CGCTTTGATG CACGGTTCTT CTTGCTCAAA
GCGGAGGATC TGCGCGGCGA TCTAGATGAC TTCTCCCGCG CCTCCGACGA GTTATCCCAC
CTGCAGTGGA TCCCGCTCAG CCAGGTGCGC AGCTTTGATC TGCCGTTCAT CACCGAGGTC
GTGCTGGCAG AGGTCACCGC CAACCTGCGC CACGAAAGCC CCCCGGAGAG CACGCCCTTT
TTTCGCAATG ATGATGAAGA GAGCCTCTTT TTGCGCTTGC ATGGCCGCCC GATGTCGCAG
GCGGATTGA
 
Protein sequence
MAATGASDTS IDKTTIRDAA TVIVVRDSKS DDPKVLMGQR GAKAAFMPNK FVFPGGAMDL 
GDREIALAGD IGAPCRNRLQ EDGGAEVWRA LCVAAARELW EETGLILGQP GYWPAEVPKD
WQSFAATGHV PDASALTFVF RALTPPGRPR RFDARFFLLK AEDLRGDLDD FSRASDELSH
LQWIPLSQVR SFDLPFITEV VLAEVTANLR HESPPESTPF FRNDDEESLF LRLHGRPMSQ
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