| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2172 |
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| Symbol | |
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| ID | 4076771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2285415 |
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| End bp | 2286107 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007494 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_614166 |
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| Protein GI | 99082012 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTCT CTGCGCTTCT TTTCGACAAG GACGGCACGC TTTTTGACTT TGCCCAGACC
TGGAATGGCT GGGCGCTGGG GATGCTCACG GAGTTGGCCG GTGAGGACAC AGGGCGTCTG
GGCGCGATGG CCGAGGCGGT GCGCTACGAT TTGACCGAAC GCGCCTTTCA TCCCGACAGC
CTGGTGATCG CAGGCACCAA TGACGAGGTG GCCGAGGTGT TGTCGCCGCA TGTGCCGCAG
ATGAGTGAGA CTGATCTTGA GCAATACCTG ATCCGCACTG CGGGTGAGGC CGAATTGGCA
CAGGCGGTAC CGCTCGCGCC GTTTCTGTCG GACTTGCGCG CGTCTGGCCT GAAGTTGGGC
GTGATGACCA ATGACGGCGC GCATTCGGCG CAACGGCATC TGACCCGTTC TGGCGTCTAT
GACCAATTTG ACATGGTGAT CGGGGCTGAC AGCGGATTTG GCTCCAAACC CGACCCCGAC
CCGCTCCTGG CCTTTTGTAG CCATGTGGGT GTCGCCCCCG GCGCAACTGC GATGGTCGGC
GACAGTCGCC ACGATCTGAT TGCGGGGCGT GCAGCGGGGA TGCGCACCAT TGGCGTTCTG
ACCGGTTTGG CTCGCGCCGA GGATCTGGCC GATTTGGCCG ATGTCGTGCT GCCCAATATC
GGTCATATCC CGGACTGGCT TGCGCAGGCC TGA
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| Protein sequence | MTLSALLFDK DGTLFDFAQT WNGWALGMLT ELAGEDTGRL GAMAEAVRYD LTERAFHPDS
LVIAGTNDEV AEVLSPHVPQ MSETDLEQYL IRTAGEAELA QAVPLAPFLS DLRASGLKLG
VMTNDGAHSA QRHLTRSGVY DQFDMVIGAD SGFGSKPDPD PLLAFCSHVG VAPGATAMVG
DSRHDLIAGR AAGMRTIGVL TGLARAEDLA DLADVVLPNI GHIPDWLAQA
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