| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2168 |
|---|
| Symbol | |
|---|
| ID | 4076767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2279428 |
|---|
| End bp | 2281509 |
|---|
| Gene Length | 2082 bp |
|---|
| Protein Length | 693 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638007490 |
|---|
| Product | molydopterin dinucleotide-binding region |
|---|
| Protein accession | YP_614162 |
|---|
| Protein GI | 99082008 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGAC AAGCCAGATC CTCTCAAGAC ACGCGTGTCG TGCCCAGCGT TTGCCCGTTG
GACTGCCCGG ACACCTGTAG CCTCAGCGTC GAGGTAACGG GCGATCAGAT TACTGCCGTA
CGCGGGTCAA ATGCCAATCC GTTTACGGCC GGTGTGGTCT GCAACAAGGT CACGCGCGCC
TACCCTGACT TTGTACATGG TCCGGCGCGG CTCACACATC CGCTGCGGCG GGTGGGGCCG
CGGGGGGCTG GCACGTTTGA ACGCATCAGT TGGGAGGATG CGCTGGATCT TGTGGTCGAA
GGGTTTCACG CTGCCATTGA TGCGCATGGC GCGCAGTCGA TCTTGCCGCT GAACTATGCT
GGACCTCACG GGGAGCTGGC GGGGGGCTCG CTCGATCGGC GATTTTTCTA CCGTCTGGGC
GCCACGCGAA TGGATCGCGG CCCGCTCTGC GGCGGCGTGC GCAGCCTCGC CTATGAGAGC
CTCTATGGCA ATGCTCCCGG CATGCCGCCG GAACAGGCCC AGCATGCCGA TCTCATCGTG
GTCTGGGGCA ACAATGTGAC GGTCTCCAAC CTGCATCTGA CACGGATCGT CAAAGCGGCC
CGCGCCAAGG GTGCGCGTCT GGTGGTGATT GACCCCAAGC GGATCAAGAT CGCAGAGCAG
GCCGACCTCT ATCTTCAGGT GCGACCCGGA ACCGATGTGG TGCTTGCCCA TGCGCTTGCG
GCTGAACTCG AACGGCGCGG CGCATTTGAT GCGGAGTTTA TTGCGCATTG GGTGCATGGC
GTTGACGAGT ATATGGACGA GGCGCGCAAG CACAGCGTTG AAAACGCTTC TGAAATCTGC
GGCCTCGCTG TCAGCGATAT CCTCAAGCTG GCGGATTGGA TGCAGACTGC GCAGAGGCTG
GCCACCTCCA CCGGCAATGG GATGGAACGG GGACGCTCCG GAGGTTCGGG GCTGCGCGCG
GCGATGGCGC TCAATGCGCT CCTGGGACAG CACGGGCGAC TGGGAGCCGG GGTGGTGGCC
AAATCCGGAC TGGCCTCCCC CAAGACACGC GCCCGGCTGC AGGGCGATCA TCTGATCGAC
CCTGAAACAC GGGTGGTGAA TATCCTTGAT GTGGCACAGC TGATGCTTGA TCGCGAGCAA
TCCACACCGA TCAATGCCGT CATGATCTAC AACCACAATC CTGTCGCGAC ACACCCCGAC
CAGACTCGGA TGATTGCGGC GTTGAGTCAG CCTGAGATCT TTACCGTTGG CTGCGACGTG
GTGATGACCG ACAGCATGGC ATATTGCGAT GTGATCCTGC CCGCAGCCAC CCACTTTGAG
CACGATGAGA TCTTTGCCGC CTATGGTCAG AACTATGTCC AGCGGGCCGA GCCCGTGATC
GCGCCCATCG CGGAAAGTCT GCCGAACACG GAGATTTTCC GCCGTCTGGC CGCGCGTTTT
GGCTATATCG AGCCAGAGCA TCAGGCTTCG GACGTGCAGT TGATGGATGA CGCGATGGAT
GCCAGCCATC CGCAATTTGA AGGCCGCCCC CCAAGCCAGA TGCCGGTGGA TCGCGCGTTG
GAAATGCAAA AAAGCGATGG CGCTGCTCTG GTCCTCTGCG AGACGGTGAC GCCCGACACA
GAAACAGGCC GGATTGAGCT GTTCAGCGCC GCGCTCGAGG CGGAGACCGG CTTTGGCGTG
CCGCGCTATG ATCCGGTGTC GCAGGACCTG CCTTTGGTGT TGATTACCCC GAGTTCGGAC
AAACGCATCA ACGCCACTTT CGGCAGCGCG CCGCTTTCCG CAGGGCCCGA GAGCATCGAG
GTGCACCCCG AAGACGCCGC CGCACGGGGG CTGCAGGATG GTGATTTGGT CGAGGTTGCC
AACGCCCGCG GAAGCGTCAC GTTCCGTCTC AAGATCTCGG ATGCGATGCA GCGCGGTGTG
ACGTATGCCC CCAAGGGTAC ATGGCGCATC AGTTCCAAGA CGGGCCTCAC CGCAAACGCT
CTGATCCCGG TGGAGGTACG CACCGATATT GGCGACGGGG CCTGCTATAA CGAGACCTTC
GTTGAGCTGC GCGCCTATGC CGGGGTGCGC GCCGCCGAGT GA
|
|---|
| Protein sequence | MSRQARSSQD TRVVPSVCPL DCPDTCSLSV EVTGDQITAV RGSNANPFTA GVVCNKVTRA
YPDFVHGPAR LTHPLRRVGP RGAGTFERIS WEDALDLVVE GFHAAIDAHG AQSILPLNYA
GPHGELAGGS LDRRFFYRLG ATRMDRGPLC GGVRSLAYES LYGNAPGMPP EQAQHADLIV
VWGNNVTVSN LHLTRIVKAA RAKGARLVVI DPKRIKIAEQ ADLYLQVRPG TDVVLAHALA
AELERRGAFD AEFIAHWVHG VDEYMDEARK HSVENASEIC GLAVSDILKL ADWMQTAQRL
ATSTGNGMER GRSGGSGLRA AMALNALLGQ HGRLGAGVVA KSGLASPKTR ARLQGDHLID
PETRVVNILD VAQLMLDREQ STPINAVMIY NHNPVATHPD QTRMIAALSQ PEIFTVGCDV
VMTDSMAYCD VILPAATHFE HDEIFAAYGQ NYVQRAEPVI APIAESLPNT EIFRRLAARF
GYIEPEHQAS DVQLMDDAMD ASHPQFEGRP PSQMPVDRAL EMQKSDGAAL VLCETVTPDT
ETGRIELFSA ALEAETGFGV PRYDPVSQDL PLVLITPSSD KRINATFGSA PLSAGPESIE
VHPEDAAARG LQDGDLVEVA NARGSVTFRL KISDAMQRGV TYAPKGTWRI SSKTGLTANA
LIPVEVRTDI GDGACYNETF VELRAYAGVR AAE
|
|---|
| |