Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2158 |
Symbol | |
ID | 4076757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2267409 |
End bp | 2268128 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638007478 |
Product | XRE family transcriptional regulator |
Protein accession | YP_614152 |
Protein GI | 99081998 |
COG category | [K] Transcription |
COG ID | [COG1396] Predicted transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.233392 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.181964 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCATACTT TCACCCAAAT CGATCTCGCT TCCGGCCTAT GGGAAATTTT TGGTAAAATA AGAAAAAATA TGTCTGAAAC AACAGGAAAA GAGTCTTCGT TTTCCGCCGA CACGCATTCG GCGGTGCTTG ATGAAGGAGA AAAACAGCGC ATACGACTTG AACTCGGCAG GCGAGTCAAA GGCTTACGCA GCGCTGCGGG GATGACGCTC GAGCAAGCTG CTGAACGCAC GCGACTTGCC GTTTCGACGA TCTACAAGAT CGAAAACGGC AAAGTATCCC CGAGTTTTGA GAATCTGCTG CGACTCGCGC GGGGCTATGG CGTTGGACTG GAAAAGCTCA TCGCTGAACC TGAAGACGAG GTTCACACCA CCCGGCTCAC TGTGACGCGG GCGGGGCAGG GGCGCTCGGT CGAGGGCAAG GTCTATGATT ATGAAGTGCT GTGCAACGGG CTCACCGGGA AGAAGATCAT CCCGCTGATC GGCACCATCT GCGCCAAGGG CGAAGGCGTG CCTGCCCACT TGGACCGCCA TGATGGCGAG GAGCTGTTGC TGGTGCTCGA AGGGGAGGTC GAACTGCGGG TGGAGCATTA CGAACCAGTG ATCCTCGCCG CCGGAGACTG CGCCTATTAC GACAGTACCC TGCGCCATGG TGTGCGTAGC ACCGGCCCTG ACAAAGCGCG GGTGTTCTGG GCCTGTACCC ATCTCGGGGC CCTGAGCTGA
|
Protein sequence | MHTFTQIDLA SGLWEIFGKI RKNMSETTGK ESSFSADTHS AVLDEGEKQR IRLELGRRVK GLRSAAGMTL EQAAERTRLA VSTIYKIENG KVSPSFENLL RLARGYGVGL EKLIAEPEDE VHTTRLTVTR AGQGRSVEGK VYDYEVLCNG LTGKKIIPLI GTICAKGEGV PAHLDRHDGE ELLLVLEGEV ELRVEHYEPV ILAAGDCAYY DSTLRHGVRS TGPDKARVFW ACTHLGALS
|
| |