| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2155 |
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| Symbol | |
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| ID | 4076754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2262375 |
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| End bp | 2263757 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007475 |
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| Product | multi anti extrusion protein MatE |
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| Protein accession | YP_614149 |
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| Protein GI | 99081995 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.185662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.158965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACCT CCCCTCCAAA TCGATTTTTG ACCGCCCGCT TGGGGCCGGT TTATGCAAAA
ACTGCGTTGC CCATCATCTT TGTGATGGGG ATGAACGGCT TTTTGACCGT GGCGGACGCG
CTGTTTCTGG GGCATTTCGT CGGGCCCGAG GCTTTGGCCG CTGTGACGCT GATGTTTCCC
GGCTACATGT TGGTTGTGGC TCTGGCAACG CTGGTGGCCA GCGGCATGTC CAGTCGGCTG
GCCCGTCATC TCGGTGCGGG CGATACCGAG GCGGCGCAGG CCGATTTTGC GGCGGCGCAT
GGTCTGGCGC TCTCGGTCGC GGTGGGCCTC ATGGCGGCTT TTGCGCTCTG GGGGAGCGCT
GTGGCGCATG CCGCCGCCGG GGGCGACCGC CTCCTTGCTG ACATGGGGCA CACCTATCTG
CGGATCACTG TGGGGTGTAC GCCGCTCCTG TTCGTGCTCT CGGTGAATTC CGACGCCTTG
CGTAACGAGG GCCGGGCCGG ACTGATGGCC CTCATGAGCC TTGTCGTCTC GCTGTCGAAT
ATTGCGTTCA ACTATCTGCT GATCGCCCAA GCGGGATTGG GCGTGGCGGG ATCGGCGTTG
GGAACGGCTT TGGCACAGGT TCTGGCGCTC TCGCTGATCG TGGCGTTTCG CCTGCGTGGC
GATACAGTTT TGCGGCCAAG CTGTCTTTGG CGACAGAGCC TTTGGGGCGG CTGGGGGCGG
ATGCTTGCGC TGGGCGCGCC GCAGAGTCTC AACTTTATCG GCATCGCCTT GGGGTCGGCG
GTGATTATGT TTGCACTGCA ATGGGTTGAT GTCTCTGATT ATGCAACAAC GGTGAGCGCC
TATGGGGTCA TCACACGACT TTTGACCTTC ACGTTCCTGC CGCTTTTGGG GCTGTCGCAT
GCGATGCAGA GCATCACCGG GAACCTGTAT GGGGCAGGTC AAATCCTTAG AGTGGGGCAA
AGCCTCCGGT TCGCGGTCGT GAGTGCCTTG ATCTATTGCG CGGTGATGCA GGCCGGTCTG
ACGTGGGGCG CTGCATGGAT TGCAGCGTGG TTTGTGGACG ATCAGGGCGT TATCGAAGAC
GTTGCGCGCA TCCTGCCCAT TCTTGGCGCT CTTTTTGTGC TCGCGGGGCC GCTCATGATG
GTGGCAATGC ATTTTCAGGC GATAGGAGAT GCCCCGCGGG CTGCGCTTCT GGGGCTCTCC
AAACCCTATC TGTTCTCGAT CCCACTGACC TTTATGCTTG CTGCGCTTTG GGGGGAGCCC
GGGATCTGGC TTGCTGCGCC CGTTGCCGAG GCGGGGCTCC TTGTGCTGAC GGGGCTGGTT
CTGCTGGACC TTCGTCGCCG GCGTGACCAA GTGACCTCCA AAGTGCAGGA GCGCCGCGCA
TGA
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| Protein sequence | MSTSPPNRFL TARLGPVYAK TALPIIFVMG MNGFLTVADA LFLGHFVGPE ALAAVTLMFP
GYMLVVALAT LVASGMSSRL ARHLGAGDTE AAQADFAAAH GLALSVAVGL MAAFALWGSA
VAHAAAGGDR LLADMGHTYL RITVGCTPLL FVLSVNSDAL RNEGRAGLMA LMSLVVSLSN
IAFNYLLIAQ AGLGVAGSAL GTALAQVLAL SLIVAFRLRG DTVLRPSCLW RQSLWGGWGR
MLALGAPQSL NFIGIALGSA VIMFALQWVD VSDYATTVSA YGVITRLLTF TFLPLLGLSH
AMQSITGNLY GAGQILRVGQ SLRFAVVSAL IYCAVMQAGL TWGAAWIAAW FVDDQGVIED
VARILPILGA LFVLAGPLMM VAMHFQAIGD APRAALLGLS KPYLFSIPLT FMLAALWGEP
GIWLAAPVAE AGLLVLTGLV LLDLRRRRDQ VTSKVQERRA
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