| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2111 |
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| Symbol | |
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| ID | 4076425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2215682 |
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| End bp | 2216980 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638007430 |
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| Product | L-pipecolate dehydrogenase |
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| Protein accession | YP_614105 |
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| Protein GI | 99081951 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGCGCAG ACACATCCCT GTCCCAATCC AACGCCGAGC CAATCTCTTT GTGGGACCAT
TCGTCCGAGG AGCCCGCCTA CGCAAATCCA AACGCCCGTG AAAGCCGCGT TGACGTGGCG
ATCGTCGGAG GTGGCTACAC GGGTCTTTCG ACCGCGCTCC ATGGCGCGCT CAAGGGGCTG
TCCTGTCATG TGCTGGAAGC CGCAGAAATC GGTCACGGAG GCTCCGGGCG CAATGTCGGG
TTGGTCAATG CCGGGCTCTG GCTGCCGCCA CAGCAAGTGG AACACCTCTT GGGCAAGACG
CACGGCGGCG CCCTTGTGCG CACGCTGGGC GAGATGCCAG ACTATGTTTT CTCGCTGATC
GAGCACCATC AGATCCGCTG CGAGGCAACT CGCGCGGGCA CGATCCACGC GGCCCACGCC
GCCTCGGGCC TGCGCGATCT CGAAGCGCGC GCCGCAGGCT GGCAGGCACT TGGCGCTCCG
GTGCGGCTGC TGTCGGCCGA AGAAACCGCC GAGAAGACCG GCACCGTCAA ATTTCACGGG
GGCCTCCTGG ATGCCCGCGC GGGTACCATC AATCCGATGG GGTATGTGCG CGGATTGGCC
CGCGCCGCAC GGGCCGCCGG GGCCGAGATC TCCACGCAGA CCAAGGTACT GTCGCTGCAG
AAAGACGGTG CGGACTGGAA AGTGGAGACC GATCGCGGCG TGATTACCGC TGGACGCGTG
GTCCTTGCCA CTAATGCCTA CAGCGCGGAC CTCTGGCCGA AACTGGCGCA GAGCTTTACC
CCAATCCATT TCTTCCAACT TGCCACGGCC CCCTTGGGCG CTGAGGCCAG CGCGATCCTC
CCCGATGGTC AGGGCCTTTG GGACACCGGC AAGATCATGT TCTCTCTGCG CCGCGATCGT
GCGGGGCGGC TGATCATCGG CTCCATGGGG TCGGTCGTGG GCGGCACCGC AGGGCTCTCG
CGCCGGTGGG CGGAACGCAA GTTGCGTCGC CTGTTTCCGG ATCTTGGTAG GCTTGACTTT
GAGGATGCGT GGCACGGGCA GATCGCCTTC ACTCCGGACC ATCTGTTTCG CATCCACCGC
CTCGACGAAG GGCTTTATGC ACCGGTGGGC TATAATGGGC GTGGCATAAC AACCGGGACA
CTGTTTGGCC GGGCGTTGGC GGATCTTTTT GCCGGCGCAC CCGAAGAGAG CCTGCCGCTG
CCGATCTCTG ACCTTGTGCC GGACAGGGGG CGCGCTGTGA AAACACAGCT CTATCGGAGC
GCGTTTCTCG CCAAACAGGC GGCAGAGAGC ATTCTCTGA
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| Protein sequence | MRADTSLSQS NAEPISLWDH SSEEPAYANP NARESRVDVA IVGGGYTGLS TALHGALKGL
SCHVLEAAEI GHGGSGRNVG LVNAGLWLPP QQVEHLLGKT HGGALVRTLG EMPDYVFSLI
EHHQIRCEAT RAGTIHAAHA ASGLRDLEAR AAGWQALGAP VRLLSAEETA EKTGTVKFHG
GLLDARAGTI NPMGYVRGLA RAARAAGAEI STQTKVLSLQ KDGADWKVET DRGVITAGRV
VLATNAYSAD LWPKLAQSFT PIHFFQLATA PLGAEASAIL PDGQGLWDTG KIMFSLRRDR
AGRLIIGSMG SVVGGTAGLS RRWAERKLRR LFPDLGRLDF EDAWHGQIAF TPDHLFRIHR
LDEGLYAPVG YNGRGITTGT LFGRALADLF AGAPEESLPL PISDLVPDRG RAVKTQLYRS
AFLAKQAAES IL
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