| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2107 |
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| Symbol | rpsD |
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| ID | 4077858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2211714 |
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| End bp | 2212334 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007426 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_614101 |
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| Protein GI | 99081947 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCAAAC GCACGTCTGC CAAGTACAAA ATTGACCGCC GCATGGGCGA AAACATCTGG
GGCCGCCCGA AGTCCCCGGT GAACCGTCGC GAATATGGCC CCGGCCAGCA CGGTCAGCGC
CGCAAAGGCA AACTCTCTGA CTTCGGTATC CAGCTGCGCG CCAAGCAGAA GCTCAAGGGC
TACTACGGCG ACCTGACCGA AAAGCAATTC CGCCGCATCT ACGGCGAAGC CGAGCGTGTT
AAGGGCGACA CCGGTGAAAA CCTGATCGGT CTGCTGGAGC GTCGTCTGGA CGCCGTCGTT
TACCGCGCGA AATTCGTGCC GACCGTTTTT GCGGCCCGTC AGTTCGTGAA CCACGGCCAC
GTTCTGGTGA ACGGCAAGCG CGTCAACATC CCCTCCTACC GCGTGAAAGA GGGTGACGTG
ATCGAAGTGC GTGAAAAGTC CAAGCAGAAC GTTGCCGTTC TCGAGGCTGT TCAGCTCGCC
GAGCGCGACG TGCCTGACTA CATCGAAGTG GACCACTCCA AGCTGACCGC CACCTTCGTA
CGCGCACCTG GCCTGGCTGA CGTTCCGTAC CCGGTCGTCA TGGAACCGAA CCTCGTGGTC
GAATTCTACG CCAAAAACTA A
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| Protein sequence | MTKRTSAKYK IDRRMGENIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGI QLRAKQKLKG
YYGDLTEKQF RRIYGEAERV KGDTGENLIG LLERRLDAVV YRAKFVPTVF AARQFVNHGH
VLVNGKRVNI PSYRVKEGDV IEVREKSKQN VAVLEAVQLA ERDVPDYIEV DHSKLTATFV
RAPGLADVPY PVVMEPNLVV EFYAKN
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