| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2076 |
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| Symbol | |
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| ID | 4077827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2179542 |
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| End bp | 2180870 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638007395 |
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| Product | dTDP-4-dehydrorhamnose reductase |
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| Protein accession | YP_614070 |
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| Protein GI | 99081916 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0702] Predicted nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.106367 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCCT CTAAACCAAA CACCCCTCTA GAACTGACGG TGCTCATCAT TGGCGCATAT
GGCCTCATCG GGTGTGGGGT CGCGCAGCGT TTAGAGCGCG ACGGACATAG GATCATCGGG
CTTGGTCGCG ATACCGACAC CGGGAAACGC GTCATTCCAA CAATCGACTG GCTTCCCGCA
GATCTTCGCT CATTGACCAA AGCGAGCGCA TGGCAACCTT TCTTGGAAGG CATCAATGCC
GTCGTGAATT GCTCCGGCGC TCTACAGGAC GGGCCCGAGG ATGACCTCGA GGTGGTCCAC
CACCACGCCG TGGCCGCTTT GGCTGAAGCT TGTGCGACCT CACAAGTGAA ACTCGTTCAA
ATTTCGGCGG TAGGTGCCTC TGAGGATGCG GCAACGCCAT TTCTTGCATC AAAGGGACGC
GGTGATGCTG CGGTTCAGCG AGCAGGCAAA GATCACCATA TCTTTCGACC CGGGCTCGTT
TTGGCAAGAC ATAGCTATGG TGGAACAACC ATGCTACGCA TGTTGGCCGC ATTTCCGTTG
GTACAACCTC TTGCAGTGCC CGATGCCAAG ATTCAGACGG TTGCATTGGA TGATGTCGCA
AAAGCCGTAA GCGCAGCACT TGCAGGTGAT ATTCCCAATG GCTTTGTTGG CGATCTGGTG
GAAACCGAAA CTCATTCGTT GCGCAACGTG GTGGCGTCAA TCCGCGCTTG GTTGGGATTT
GCGCCAACAA AACATGAGTT TCTGATCCCA AGTCTATTTA CAATATCAAT GTCGAAGATT
GCAGATGGAT TGGGAAGGCT CGGATGGCGA TCGCCGTTGA GAAGCACTGC GATCAAAGTG
CTGGACGATG GCGTAACCGG AGTTCCCACT GACCTCTCTC GGTTTGGGTT GTCTCCCGTC
AGATCACTCT CGCAAACCTT GGCGAGTATG CCAGCGCGAG CTGAGGATCG ACTGTTTGCT
CGAATGGCAC TGCTTACTCC CATCATCATT GCTACGCTCA TTAGTTTTTG GTTTTTGTCT
GGTGTCATTG GACTCCTCCA AATAGGGGAG GCTGCGCTTG TTCTTGAAAA CGTCGGCTGG
ACACATGCCT TGGCAGCGAC CAGCGTGCTT TTCTGGTCAA TCGTTGATCT CGCTATAGCA
GCGGCATTTG CCTACCGTCC CTATGCGAAA AAGGCGTGTT GGTGCGCCGT TGGCGTCAGT
CTTTTCTATT TGGGGGCATC AACGGTTTTT GTACCGCACC TATGGCTTGA TCCGCTCGGC
CCGATGATAA AAGTCCTGCC AAGTATTGCT TTGGCTTTGG TTGCCCGTAT TGCACTGGAA
ACGCGATGA
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| Protein sequence | MNASKPNTPL ELTVLIIGAY GLIGCGVAQR LERDGHRIIG LGRDTDTGKR VIPTIDWLPA
DLRSLTKASA WQPFLEGINA VVNCSGALQD GPEDDLEVVH HHAVAALAEA CATSQVKLVQ
ISAVGASEDA ATPFLASKGR GDAAVQRAGK DHHIFRPGLV LARHSYGGTT MLRMLAAFPL
VQPLAVPDAK IQTVALDDVA KAVSAALAGD IPNGFVGDLV ETETHSLRNV VASIRAWLGF
APTKHEFLIP SLFTISMSKI ADGLGRLGWR SPLRSTAIKV LDDGVTGVPT DLSRFGLSPV
RSLSQTLASM PARAEDRLFA RMALLTPIII ATLISFWFLS GVIGLLQIGE AALVLENVGW
THALAATSVL FWSIVDLAIA AAFAYRPYAK KACWCAVGVS LFYLGASTVF VPHLWLDPLG
PMIKVLPSIA LALVARIALE TR
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