| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2035 |
|---|
| Symbol | |
|---|
| ID | 4077962 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2143723 |
|---|
| End bp | 2144454 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638007353 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_614029 |
|---|
| Protein GI | 99081875 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.854548 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGTC TCACGACCCT GATTGACCGC TTTCGGATGC GGGTGGTTCT GGCCGCGCGC
GGGGCGGGCA ACCTTTGTGT GATGCAGCCG GAGGCAGGGC GTCAGATCCT TGTGTTCACC
CCCGAAGGGT GGGTTGAGGA CACCGGGGCA GAGGGGGTCG GTCTGGCGCT GCGTGTGGAT
TGGGACGGGG CGCATAATCC GCTTGTGGCG GCGCTGCCGC AGCGGGTGGA GGTGGATCTT
GCCGAGGCCC CGGCCCTTGC GTCCGTGCTG GCCTTGTTGC GTCAGGAACG GGAGGCGCAC
CGCTGTGGGG CGCAGTCTGT GGTTTCGAGC CTCGGTCAGG TCCTGATGGT GCGCCTCCTG
CGCCATTTGA TCGAGGCCGG CACGGCAGCG CCCGGTCTCC TTGCGGGTCT CGCCGACCCT
CGATTGGCCC GCGCGATTGT GGCGATGCAT GATGCGCCGG GGCGGAGCTG GACCACCTCG
GATCTTGCGC AGGAGGCAGG ACTGTCGCTT TCGCGCTTTT CCGAGCTGTT CTCGGCGCAG
ATGAACGAGA CCCCCATGGG GTATCTCAGG CGTTGGCGGC TGACGCTGGC GCGTCAGGAT
CTCATCCGAG GCGACCGGGT TGAGGCCGTC GCGCGCCGCT ATGCCTACGA CTCGCCAGAA
GGGTTTGCAC GGGCCTTTCG CAAATTCTAC GGCGTGGCCC CCGTTTCATT GCGGCAGAGC
ACCGCGGCCT GA
|
|---|
| Protein sequence | MDRLTTLIDR FRMRVVLAAR GAGNLCVMQP EAGRQILVFT PEGWVEDTGA EGVGLALRVD
WDGAHNPLVA ALPQRVEVDL AEAPALASVL ALLRQEREAH RCGAQSVVSS LGQVLMVRLL
RHLIEAGTAA PGLLAGLADP RLARAIVAMH DAPGRSWTTS DLAQEAGLSL SRFSELFSAQ
MNETPMGYLR RWRLTLARQD LIRGDRVEAV ARRYAYDSPE GFARAFRKFY GVAPVSLRQS
TAA
|
|---|
| |