| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1955 |
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| Symbol | |
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| ID | 4077139 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2059189 |
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| End bp | 2060073 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007270 |
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| Product | HflC protein |
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| Protein accession | YP_613949 |
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| Protein GI | 99081795 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.905613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.165477 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCT CTGTTATTCT TCTCGTCCTT CTGGGCGCTA TTGTCGTGGG CGCACTGTCC
TCGCTCTTTA TCGTGGACGA GCGTGAGAAG GCGCTGGTTC TGCGCTTTGG TCGTGTCGTG
AACGTGCAGG AAGACCCCGG TCTGGCCTTC AAGCTTCCGT TTGTGGACGA AGTCGTGAAA
TATGACGACC GTATCCTCAG CCTCGAAGTC GGGCCGCTCG AAGTGACGCC GCTGGATGAC
CGCCGCCTTG TCGTGGACGC TTTTGCACGC TACCGCATCA CCGATGTACG TCGCTTCCGC
GAAGCGGTCG GCGTTGGCAG CGAAGCCGCT GCCGAGAGCC GTCTTGACAA CATCATGCGC
GACCAGACCC GCGAGGTTCT GGGTACTGTG AGCTCCAACG ATATTCTGTC GTCGGACCGT
GCGGCGCTGA TGCTGCGGAT CCGCAATGGC GCGATTGCGC AGGCGCGGGA TCTGGGGCTC
GAGGTCATCG ACGTGCGCCT GAAACGCACT GACCTGCCGC AAGCAAACCT TGAGGCGACC
TTTGCCCGGA TGCGCGCCGA GCGTGAACGC GAAGCCGCTG ACGAGATCGC CCGCGGTGAA
GAAGCCGCGC AGCGTGTACG TGCGCAGGCG GATCGTACCG AGGTGGAGCT TGTGTCTGAG
GCGGAGCGAG AAGCCGAGGT TATCCGCGGT GAAGCGGATG CCGAGCGCAA CAACATCTTT
GCAGAGGCCT ATGGCGCGGA CCCGGAGTTC TTTGAATTCT ATCGTAGCCT CACCGCCTAT
GCGCGCGCGC TTCAGGGGGG GAACTCCTCG CTGGTGCTGT CGCCGGACAA TGAGTTCTTC
AACTACCTGA AGTCTTCCGA TGGTGCAGGC CGCGTGCAGC AATAA
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| Protein sequence | MNRSVILLVL LGAIVVGALS SLFIVDEREK ALVLRFGRVV NVQEDPGLAF KLPFVDEVVK
YDDRILSLEV GPLEVTPLDD RRLVVDAFAR YRITDVRRFR EAVGVGSEAA AESRLDNIMR
DQTREVLGTV SSNDILSSDR AALMLRIRNG AIAQARDLGL EVIDVRLKRT DLPQANLEAT
FARMRAERER EAADEIARGE EAAQRVRAQA DRTEVELVSE AEREAEVIRG EADAERNNIF
AEAYGADPEF FEFYRSLTAY ARALQGGNSS LVLSPDNEFF NYLKSSDGAG RVQQ
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