| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1927 |
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| Symbol | |
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| ID | 4076878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2026097 |
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| End bp | 2027365 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638007243 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_613922 |
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| Protein GI | 99081768 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.975227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.86306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCGC CGCTCTCGCG AATAGGCTAT GGCAGCGCCA TGAGCAAGAA AACCCCATCC
AAACCGCCCG CGCGCCGCGC CGCCAACGCT GCCCGGCCAA AGGCCACCCC CTCCGCGACG
CCGCGCGCAC ACAAGGGCCT GCAGGCAGGC GCACCCGCAG ACGCGCGGCC CTCGCAAGAC
GGTGACCGCA TCGCCAAGGT GCTGTCGCGC GCAGGCGTGG CCTCTCGTCG CGAGGCGGAA
CGGATGATTG CGGAGGGTCG CGTTGCGGTC AATGGCAAGG TCATCGACAG CCCCGCGCTC
AATGTGACCA ATCTGGATCG CATCGTGGTG GATGGCAATC CGCTGCCCGA GGCCGAGGCC
CCGCGGCTTT GGCTCTATTA CAAGCCCAAC GGGTTGGTCA CCACGACCTC CGACGAGAAA
GGGCGCAAGA CGATCTTTGA CGCATTGCCC GAGGACCTGC CGCGGGTGAT GACAGTGGGC
CGGCTTGACC TCAATTCCGA AGGCCTGCTG CTGCTGACCA ACGACGGCGG CGTCAAACGC
CAGTTGGAGC TGCCCTCGAC AGGCTGGCTA CGCCGCTACC GCGTGCGGAT CAATGGCCGC
CCGCAGGATC ATGAATTTGA CGTGCTGCGC AAAGGCGTGG TGATCGACGG CGAGCGTTTT
CAGCCGATGA CCATCTCGCT CGATCGCCAG CAAGGCGCCA ACGCATGGCT CACCATCGGG
CTGCGCGAAG GCAAGAACCG CGAAATTCGC CGCGCCATGG AAGAGGTTGG CTATCCGGTA
AACCGGCTTC TGCGGATCTC TTATGGGCCG TTCCAGCTCG GCACGCTCAA GGAAGGCGAA
GTAGAGGAGT TGCGCCCACG CGTGGTGCGG GATCAACTGG GTCTCGCCGC ACCCGAAGGG
GATGGCGAAG CCAAGAAGAA ACCCACCCGC CCCGGACGCG GCCCGCGCAA TCCTGGCGCA
AAGACTGCTG GAAAAGGCAT CGGCGCGCCC AACGCTCGCC CGACAGGTAA AGGCGCAGTC
AAAGCCCCCG AAGGCAGAGT TTTTTCTGGC AAGACCTTCT CGGGCAAAAC CACCGGCAAA
ACCGCTGGCA AACCTGCGGC TCATAAGGGC CAGGGCGGCA AACCCTCGGG TCCCAAGAGT
TTTGGGACCA AACAGGGCGG CGGCTCGGGC GCGCGAGGAT CCGGTAAACC CAATGGCGCA
TCCGGTGGGG CATCCGGCGG CAAATTCAGC CCCGGCGGGC GCCGTTTTGG CAAAAAACCG
CAGGACTGA
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| Protein sequence | MLSPLSRIGY GSAMSKKTPS KPPARRAANA ARPKATPSAT PRAHKGLQAG APADARPSQD
GDRIAKVLSR AGVASRREAE RMIAEGRVAV NGKVIDSPAL NVTNLDRIVV DGNPLPEAEA
PRLWLYYKPN GLVTTTSDEK GRKTIFDALP EDLPRVMTVG RLDLNSEGLL LLTNDGGVKR
QLELPSTGWL RRYRVRINGR PQDHEFDVLR KGVVIDGERF QPMTISLDRQ QGANAWLTIG
LREGKNREIR RAMEEVGYPV NRLLRISYGP FQLGTLKEGE VEELRPRVVR DQLGLAAPEG
DGEAKKKPTR PGRGPRNPGA KTAGKGIGAP NARPTGKGAV KAPEGRVFSG KTFSGKTTGK
TAGKPAAHKG QGGKPSGPKS FGTKQGGGSG ARGSGKPNGA SGGASGGKFS PGGRRFGKKP
QD
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