| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1899 |
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| Symbol | |
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| ID | 4077396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2000157 |
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| End bp | 2001935 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007215 |
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| Product | TrkA-C |
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| Protein accession | YP_613894 |
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| Protein GI | 99081740 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCTCT TTCAATCGGG TGACACCACA AGCGCCATTA TCGCGTTGTT GATCGTTCTT
GCGATGTTCG TGGCCTTTTT GCGCGAAACC TATCCGACCG AGGTGGTGGC GATCTGTGGC
GTCTCCTTGA TGCTGATCAC CGGGGTGCTG CCCTATGCCG AGGCGCTGCC GGTGCTGGCG
AACCCGGCGC CCTGGACCAT TGCGGCGATG TTCCTCATCA TGGGGGCCCT GGTGCGCACC
GGGGCGCTTG ATGCCTTTAC CTCTGTGGCC CGCAAAAAGG CCGAAGTGAG CCCGAAAATG
GCAATCGCGC TCCTGATGGG CTTTGTGGTG ATCGCCTCGG CCTTTGTGTC CAACACGCCG
GTGGTGGTGG TGATGATCCC GGTCTTTATC CAGATCTCGC GCACGCTCAA TGTTTCGCCC
TCCAAGATGC TGATTCCGCT CTCTTATGCA GCGGTTCTGG GCGGCACGCT CACCTTGATC
GGGACCTCTA CCAACCTGCT GGTCGATGGG GTGGCCCGCG CGCAGGGTCT TGCGCCATTC
TCTATCTTCG AGGTCACGCC CTTGGGCATC GTGGTTGTGG TCTGGGGGCT GATTTATCTG
CGCTTTATCG CGCCGCGCCT GCTGCCGGAA CGGGACAGTA TGGCGATGAT GCTCTCGGAT
CGCTCGAAGA TGAAATTCTT TACCGAAGCG GTGATCCCGC CTGACAGCAA CCTCATCGGC
CGCGAAGTCA CGGGCGTGCA GCTCTTCAAA CGCCCGGGCG TGCGGCTGAT CGACGTGATC
CGCGGCGATG ACTCGCTGCG GCGCAACCTG CAGGGCGTGG AGCTTCAGGT GGGCGACCGG
GTTGTGCTGC GCACCCAGAT GACAGAGCTT CTGAGCCTGC AGCGCAACAA GGAGCTGAAG
CGCGTCGATC AGGTCTCGGC TGTGGAAACC AAGACGGTCG AGGTGCTCAT CACGCCTGGC
TGTCGCATGG TGGGGCGCAG CCTTGGGGCA ATGCGCCTGC GTCGGCGTTA TGGCGTCTAT
GTGCTGGCGG TACACCGGCG CAACCAGAAC ATCGGCGTGC AGCTTGATGA TCTGGTGGTG
CGCGTGGGGG ATACGCTGCT GCTGGAGGGC GCGCCGGGCG ATATCCAGCG CCTTGCGGCA
GAGACGGACA TGGCCGATGT GTCCCAGCCC ACGCAGCGTG CCTATCGCCG CAGCCACGCG
CCGGTTGCAG TGGCCGCCAT GGTCGGCATC GTGATCGCCG CCGCCTTTGG TCTGGCACCG
ATCCTGATGC TGTCGATCCT TGCGGTGGCG CTGGTGCTGG CGACCCGCTG TATCGACGCG
GATGAGGCGT TTTCCTTTGT GGATGGGCGG CTTCTGGCGC TGATCTTTTC CATGCTGGCC
ATTGGCGCGG CGCTTGAAAG CTCCGGCGCG GTCGAACTCA TTGTCAACGC GATCTCCCCG
GCCTTGGTGG ATCTGCCGCC CTTCTTTCTG GTCTGGGCGG TATATCTTCT GACGTCGGTG
CTCACCGAGC TTGTGTCCAA CAATGCCGTT GCCGTGGTGG TCACGCCGAT TGCGGTGGGG
CTGGCGCAGG CCATGGGGCT TGATCCGCGC CCGCTGGTGA TAGCGGTGAT GATTGCAGCC
TCGGCCTCAT TTGCCACGCC CATCGGCTAT CAGACCAATA TGCTGGTCTA TGGTCCGGGG
GGCTACAAGT TCTCGGACTT CCTCCGGGTG GGCATTCCGC TCAATCTCTC GATGGGGCTT
TTGGCCTCGG CCGTGATCCC GCTGCTCTGG CCACTCTGA
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| Protein sequence | MFLFQSGDTT SAIIALLIVL AMFVAFLRET YPTEVVAICG VSLMLITGVL PYAEALPVLA
NPAPWTIAAM FLIMGALVRT GALDAFTSVA RKKAEVSPKM AIALLMGFVV IASAFVSNTP
VVVVMIPVFI QISRTLNVSP SKMLIPLSYA AVLGGTLTLI GTSTNLLVDG VARAQGLAPF
SIFEVTPLGI VVVVWGLIYL RFIAPRLLPE RDSMAMMLSD RSKMKFFTEA VIPPDSNLIG
REVTGVQLFK RPGVRLIDVI RGDDSLRRNL QGVELQVGDR VVLRTQMTEL LSLQRNKELK
RVDQVSAVET KTVEVLITPG CRMVGRSLGA MRLRRRYGVY VLAVHRRNQN IGVQLDDLVV
RVGDTLLLEG APGDIQRLAA ETDMADVSQP TQRAYRRSHA PVAVAAMVGI VIAAAFGLAP
ILMLSILAVA LVLATRCIDA DEAFSFVDGR LLALIFSMLA IGAALESSGA VELIVNAISP
ALVDLPPFFL VWAVYLLTSV LTELVSNNAV AVVVTPIAVG LAQAMGLDPR PLVIAVMIAA
SASFATPIGY QTNMLVYGPG GYKFSDFLRV GIPLNLSMGL LASAVIPLLW PL
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