Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1893 |
Symbol | |
ID | 4077390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1994121 |
End bp | 1994861 |
Gene Length | 741 bp |
Protein Length | 246 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638007209 |
Product | hypothetical protein |
Protein accession | YP_613888 |
Protein GI | 161899028 |
COG category | [S] Function unknown |
COG ID | [COG0217] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.519482 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.766951 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGGCC ATTCCAAATG GGCAAACATC CAGCACCGTA AAGGTCGCCA GGATGCTGCG CGGTCCAAGC TCTTCTCCAA ACTTTCCAAA GAAATCACCG TCGCCGCCAA AATGGGCGAC CCGGACCCTG AAAAGAACCC GCGCCTGCGC CTTGCTGTGA AGGAAGCCAA GTCGAACTCC GTGCCCAAGG ACGTGATCGA CCGCGCCATC AAGAAGGCGA CCGGGGGCGA TGCGGAGAAC TACGACGAGA TCCGCTACGA GGGTTACGGC CCCAATGGTG TCGCAGTGAT CGTCGAGACC ATGACCGACA ACAAGAACCG CACCGCCTCC ACCGTGCGCT CGACCTTCTC CAAGAACGGC GGCAACCTCG GTGAAACCGG CTCTGTCGGC TTCATGTTCG AACGCAAGGG CGAAGTGACC TATCCAGCCT CTGTGGGCGA TGCGGACACG GTGATGATGG CCGCAATCGA AGCGGGCGCC GAGGATGTGG AAAGTTCTGA AGACGGGCAT GTGATTTTCT GCGCGGATAC CGACCTCAAC GAGGTGTCCA ACGCGCTTGA GGCGGAGCTT GGCGAATCCG AGAGCACCAA GCTGATCTGG AAGCCCACCA CCACCACCGA GCTTGATCTC GAAGGCATGC AAAAGCTGAT GAAACTGGTG GATGCGCTGG AAGACGACGA TGATGTGCAG CGCGTGACCA CCAACTTTGA GGCCTCCGAC GAGGTGATGG CCCAGCTCTG A
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Protein sequence | MAGHSKWANI QHRKGRQDAA RSKLFSKLSK EITVAAKMGD PDPEKNPRLR LAVKEAKSNS VPKDVIDRAI KKATGGDAEN YDEIRYEGYG PNGVAVIVET MTDNKNRTAS TVRSTFSKNG GNLGETGSVG FMFERKGEVT YPASVGDADT VMMAAIEAGA EDVESSEDGH VIFCADTDLN EVSNALEAEL GESESTKLIW KPTTTTELDL EGMQKLMKLV DALEDDDDVQ RVTTNFEASD EVMAQL
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