| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1855 |
|---|
| Symbol | |
|---|
| ID | 4077880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1956344 |
|---|
| End bp | 1957486 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638007171 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_613850 |
|---|
| Protein GI | 99081696 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.631285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCTGC CCGCCCGCAA ACAACTGAAA TACTGGGGCA TTGCCGCAGT TCTGTTCGCT
GTCGTCATGT GGGCGCTCGG CAATGTGCTG ATGCCCTTCA TCCTGGGCGG CGCCATCGCC
TATATCATCG ACCCGCTGGC CGACCGGCTG GAACGTGCGG GCCTCAGCCG TGAGGGCGCA
ACCGCGGTGA TCACGGTGGG GGCCGTGCTG ATCTTTTTGA TCCTGCTGCT GCTGATCGTG
CCGGCGCTGA TCAACCAGAT GATTGATCTG GTGCAGACGC TGCCGCAGGC GCTCTCCAAC
CTGCGCGCCT TTGCGCAGGA GCGCTTTCCG TCGCTGTTTG AAGACAACAG CCAGCTGCGC
GAGGCCCTTG CCGGGTTGTG GCAGATCATT CAGGACAAGA GCGTCACCCT GCTGCAGACC
TTTGTCGGCT CGGCGATGTC GCTGCTGAAC ATCGTGGTTC TGTTGGTGAT CGTGCCGGTG
GTGGCCGTCT ACCTGCTGGT GGACTGGGAC CGGATGGTGG CGCGCATTGA CGAGCTCTTG
CCACGCGATC ACGCGCCGGT GGTGCGTCAT CTGGCCAGCG AGATCGACAG GGTGCTATCG
TCCTTTATCC GTGGCATGGG GTTGGTCTGC GTCATTCTTG GCACCTATTA CGCGGTGGCC
CTGATGCTGG TGGGGCTGAA TTTTGGCCTT GCGGTGGGCT TTGTCGCGGG GCTTGTGACC
TTCATTCCCT ACCTCGGCGC CATCATCGGC GGCGTGCTCG CCATTGGTCT GGCGCTGTTC
CAGTTCTGGG GCGCGCTTGA GGGCGCGGAC GGCGAGATGA TCCGCCAGGG CACCGACTGG
CTGCGCATTG CGCTGGTGGC GGGGATCTTT GCCATCGGCC AGATGGTCGA AGGCAACTTC
CTGACCCCAA AGCTCGTGGG CAACTCGGTC GGGCTGCACC CGGTCTGGCT CCTGCTGGCG
CTGTCGGTCT TTGGCGCGCT CTTTGGGTTT GTCGGCATGT TGGTCGCGGT GCCGGTGGCG
GCAGTGATCG GGGTGGTTGC ACGTTTCGCA GTAGAGCAGT ATCTGCACAG TCGGCTCTAT
CAGGGGCTGT CACACCGGGA TGCGAATGTC CGCACCTCCG AGGATACACC GACCGACATC
TGA
|
|---|
| Protein sequence | MALPARKQLK YWGIAAVLFA VVMWALGNVL MPFILGGAIA YIIDPLADRL ERAGLSREGA
TAVITVGAVL IFLILLLLIV PALINQMIDL VQTLPQALSN LRAFAQERFP SLFEDNSQLR
EALAGLWQII QDKSVTLLQT FVGSAMSLLN IVVLLVIVPV VAVYLLVDWD RMVARIDELL
PRDHAPVVRH LASEIDRVLS SFIRGMGLVC VILGTYYAVA LMLVGLNFGL AVGFVAGLVT
FIPYLGAIIG GVLAIGLALF QFWGALEGAD GEMIRQGTDW LRIALVAGIF AIGQMVEGNF
LTPKLVGNSV GLHPVWLLLA LSVFGALFGF VGMLVAVPVA AVIGVVARFA VEQYLHSRLY
QGLSHRDANV RTSEDTPTDI
|
|---|
| |