| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1809 |
|---|
| Symbol | |
|---|
| ID | 4076955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1900693 |
|---|
| End bp | 1902174 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638007124 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_613804 |
|---|
| Protein GI | 99081650 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0916178 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAT TCACCGATCT GAACCTCAAT CCGAAGGTCC TCAAAGCCAT CGAGGAAGCC
GGATACGAAA GCCCCACCCC GATTCAGGCA GGCGCAATTC CCGCCGCATT GGAAGGGCGC
GATGTCCTCG GAATCGCTCA GACCGGCACC GGCAAAACCG CCTCTTTCAC CCTGCCGATG
ATCACCCGCC TTGCGCGTGG CCGCGCCCGG GCGCGCATGC CGCGCTCGCT GGTGCTCTGC
CCGACGCGCG AACTCGCTGC GCAGGTGGCT GAAAACTTCG ACACCTACGC CAAACACGTC
AAGCTCACCA AAGCCCTCCT GATCGGCGGC GTTTCCTTCA AGGAACAGGA CGCCGCAATC
GACCGTGGTG TAGACGTGCT GATCGCCACA CCGGGCCGTC TGCTCGATCA TTTCGAGCGC
GGCAAGCTCC TGCTGACCGG GATCGAGATC ATGGTGGTCG ATGAGGCTGA CCGGATGCTG
GACATGGGCT TCATCCCCGA CATCGAGCGC ATCTTCTCGC TGACCCCCTT CACCCGTCAG
ACGCTGTTTT TCTCCGCCAC CATGGCGCCG GAAATCGAGC GGATCACCAA TACGTTTCTC
TCCGGCCCCG AGCGGGTCGA GATCGCCCGT CAGGCCACCA CCTCCGAGAA TATCGAACAG
GCCGTGGTGA TGTTCAAAGC CTCCCGCAAG GATCGCGAAG GCAGCGAAAA ACGCCGGGTT
CTGCGCGAGC TGATCAACCA GGAAGGTGAG GCCGTGCAGA ACGCCATCAT CTTCTGCAAC
CGCAAGACCG ATGTGGACAT CGTCGCCAAG TCCTTGAAAA AATACGGCTA TGACGCCGCG
CCGATCCACG GCGACCTGGA TCAGAGCCAG CGCACCAAGA CCCTCGACGG GTTCCGCGAC
GGCACACTCA AGATCCTTGT GGCCTCCGAT GTGGCCGCCC GCGGTCTGGA CGTTCCCTCC
GTGAGCCATG TGTTCAACTT TGATGTGCCG GGTCATGCCG AGGACTACGT CCACCGGATC
GGCCGCACCG GCCGCGCAGG TCGCGATGGC AAGGCCATCA CCCTGTGCAG CCCGCGTGAC
GAAAAGGCGC TCGATGCTGT CGAAGGTCTG GTTCAAAAAG AAATCACTCG CCTTGAAAAC
CCGGTAAAGC CGACGCCGCG CAAAACTGCG ACCAAGGACG AGGATGCAGG CGACAAGCCC
AAACCCGCCC GTCGCAGCCG CAGCAAAGCC GCCTCCGCCA AGACCGACGC GACACCAACG
CCCGAGGCGG CAAATGACGC AGCCCCGCAG GTCGAAGCCC CTCAGCAGCA GCCCCAAGAG
CCCAAGGAGA CCCGGGCCGA GCAACCGTCT GCTGGCGCCA AATCGGGCAA GTCCCGTGGT
CGTGGACGCC GCGATGATCG TCGCGACGAC AAAGTAGTGG GCATGGGCGA CCATATGCCA
AGCTTCATCG CGCTGAGCTT TGACGAGCGC CGCGCCAGCT GA
|
|---|
| Protein sequence | MTKFTDLNLN PKVLKAIEEA GYESPTPIQA GAIPAALEGR DVLGIAQTGT GKTASFTLPM
ITRLARGRAR ARMPRSLVLC PTRELAAQVA ENFDTYAKHV KLTKALLIGG VSFKEQDAAI
DRGVDVLIAT PGRLLDHFER GKLLLTGIEI MVVDEADRML DMGFIPDIER IFSLTPFTRQ
TLFFSATMAP EIERITNTFL SGPERVEIAR QATTSENIEQ AVVMFKASRK DREGSEKRRV
LRELINQEGE AVQNAIIFCN RKTDVDIVAK SLKKYGYDAA PIHGDLDQSQ RTKTLDGFRD
GTLKILVASD VAARGLDVPS VSHVFNFDVP GHAEDYVHRI GRTGRAGRDG KAITLCSPRD
EKALDAVEGL VQKEITRLEN PVKPTPRKTA TKDEDAGDKP KPARRSRSKA ASAKTDATPT
PEAANDAAPQ VEAPQQQPQE PKETRAEQPS AGAKSGKSRG RGRRDDRRDD KVVGMGDHMP
SFIALSFDER RAS
|
|---|
| |