| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1803 |
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| Symbol | |
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| ID | 4076949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1894822 |
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| End bp | 1895601 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638007118 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_613798 |
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| Protein GI | 99081644 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.560822 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0105475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTGG GCATTCGCGG CAAGCGCGCA TTGGTGTGCG CATCGAGCAA GGGATTGGGT
CTGGGCTGTG CAGAGGCGCT GGCCGAGGCA GGTGTCGATC TGTTGATGAA CGCGCGTGGC
TCCGAGGCAC TGGAGGCCTC GGCACAGGAC CTGCGCGACC GCTTCGGTGT GCGTGTGGAG
ACGCTGGCCT GCGATGTGAC CGACGAAGGC GCGCGCGCCG AGCTTATCGA CCGCGCCAAA
GGGGTCGACA TTCTGGTGAC CAATGCGGGC GGCCCACCTC CGGGTGTCTG GAGCGACTGG
GACCGCGCCG ATTTCATCAA GGCGCTCGAC GCCAATATGC TTACCCCCAT TGCGCTGATG
AAAGCGTTGC TGCCCGCGAT GATGGAAGCC GGTTGGGGCC GGGTGGTGAA TATCACTTCG
CAGTCCGTCA AAGCGCCCAT CGCGGCGCTT GGGCTCTCCA ATTCCGCGCG GGCGGGCCTC
ACTGGCTATG TAGCGGGCAC TGCACGTCAG GTTGCGGGCC AAGGTGTTGT GATCAATAAT
CTATTGCCAG GCATCCACGC CACCGACCGG GCGGTTTCCC TTGATACGGG CGTGGCGCAG
GCACAGGGGA TTTCCATGGA TGAGGCCCGC GCGCAGCGCG CCGCCACGAT CCCTGCCGGA
CGCTATGGCA CGCGGCAGGA ATTTGGGGCG ACCTGCGCGT TCCTCTGCTC GCAGCATGCG
GGTTTCATCA TTGGCCAGAA TATCCTGCTG GATGGCGGTG CCACCAATAT GACGCTCTGA
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| Protein sequence | MDLGIRGKRA LVCASSKGLG LGCAEALAEA GVDLLMNARG SEALEASAQD LRDRFGVRVE
TLACDVTDEG ARAELIDRAK GVDILVTNAG GPPPGVWSDW DRADFIKALD ANMLTPIALM
KALLPAMMEA GWGRVVNITS QSVKAPIAAL GLSNSARAGL TGYVAGTARQ VAGQGVVINN
LLPGIHATDR AVSLDTGVAQ AQGISMDEAR AQRAATIPAG RYGTRQEFGA TCAFLCSQHA
GFIIGQNILL DGGATNMTL
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