| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1780 |
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| Symbol | |
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| ID | 4076809 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1874309 |
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| End bp | 1875091 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638007095 |
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| Product | hypothetical protein |
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| Protein accession | YP_613775 |
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| Protein GI | 99081621 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
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| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.117267 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCCCA CCTCCGCCCT TGGGATGATC GGCCGCGCAT CGCTGGGCCG CCTCGCCGCC
CTCGGGCGGA TCACGCGCTT TGCCGCCTCA ACCTTCAGCC ACATGCTGCG TCCGCCCTTT
TACCCGCGCG AATTGGCAAA TGCGCTGTTG CAGGTGGGCT GGCTCAGCCT GCCGGTGGTG
GCGCTAACCG CGATCTTTAC CGGCGGCGCG CTGGCGCTCC AGATCTATGC GGGCGGTGCG
CGTTTCAACG CCGAGGCCGT GGTGCCGCAG ATTGTTGCCA TCGGCATGGT ACGCGAGCTT
GGCCCGGTCC TTGTAGGCCT GATGATTGCG GCGCGCGTGA CCTCGTCCAT TGCCGCCGAA
ATCGCCACGA TGCGCGTGAC CGAGCAGATC GACGCGCTGG TGACGCTCTC GACCAATCCG
ATGAAATACC TTGTCGCCCC GCGCGTGCTT GCCGCCCTCC TCACGGTGCC GGTTCTGGTC
GGCGTCGGAG ACATCATCGG CATCATGGGC GGCTATGTGG TGGCCACCGA AACCCTGGAT
TTCAACGCCG CCGCCTACCT CAAGAACACA GTCGACTTTC TTGAGCTGCG CGACATCGTC
TCCTCCCTCG TGAAGGGCGC AGCCTTCGGC ACTATCGCCG CCCTCATGGG ATGCTACTAC
GGCATGCAAT CGGGCCGCGG CGCCCAAGGT GTCGGGCGTG CGACCAAGGG ATCGGTCGAG
GCCGCCGCCG TGCTGATCCT TGCAGCCAAC TTCGTGCTCA CGGGGGTGTT TTTCTCGCTA
TGA
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| Protein sequence | MTPTSALGMI GRASLGRLAA LGRITRFAAS TFSHMLRPPF YPRELANALL QVGWLSLPVV
ALTAIFTGGA LALQIYAGGA RFNAEAVVPQ IVAIGMVREL GPVLVGLMIA ARVTSSIAAE
IATMRVTEQI DALVTLSTNP MKYLVAPRVL AALLTVPVLV GVGDIIGIMG GYVVATETLD
FNAAAYLKNT VDFLELRDIV SSLVKGAAFG TIAALMGCYY GMQSGRGAQG VGRATKGSVE
AAAVLILAAN FVLTGVFFSL
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