| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1749 |
|---|
| Symbol | |
|---|
| ID | 4075813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1842361 |
|---|
| End bp | 1843008 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 638007063 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_613744 |
|---|
| Protein GI | 99081590 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.110719 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCTT CTTCAAAGGA TGCCGCGTTC TGGAGCAAGA TCTCGCGCAA GTATGCGGCG
GACCCGATCC GCAACATGGA CGGCTATCTG CAAACGCTTG ATCGCACAAA ATCCTACCTG
AAGCCGGAGG ACCATGTGCT CGAGATCGGC TGCGGCACGG GATCGACCGC TTTGCTGCTG
GCGCCGCATG TTGCGCATAT CACCGGCACG GATCTGGCAC CGGGCATGAT CGAAATTGCT
GCCGAGAAAC GTGCGAAAGA AGGGCTCGAA AACGTGACGT TCAAAGTGGC CGAGACGCTC
GACCACAACC CTCAGGACGG CGCCTATGAC GCCATTTTGG CGCATAACCT GCTGCATCTG
TTGCATGATC TTGATCAATC GCTGCAGCGG ATCGCTGCGC TGACCAAAAC CGGCGGGGTC
TTTATCTCAA AAACTGTCTG CGCCCCAAAA GCCGGTGGCA TCAAATACGC GCTCATTCGT
GCGCTCGCGA TCCCGCTGAT GCAGCGGATC GGAAAAGCGC CCTATGTGAA TTTCATTTCG
GTGCCGGACC TTGAGCGTCG TATTGAACGT GCCGGATTCG AGATTTGCGA GGTGATTTCC
CAGCCCGGAC TGATGCAGAG CCACTATGTT GTGGCGCGCA AACTCTAA
|
|---|
| Protein sequence | MAASSKDAAF WSKISRKYAA DPIRNMDGYL QTLDRTKSYL KPEDHVLEIG CGTGSTALLL
APHVAHITGT DLAPGMIEIA AEKRAKEGLE NVTFKVAETL DHNPQDGAYD AILAHNLLHL
LHDLDQSLQR IAALTKTGGV FISKTVCAPK AGGIKYALIR ALAIPLMQRI GKAPYVNFIS
VPDLERRIER AGFEICEVIS QPGLMQSHYV VARKL
|
|---|
| |