| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1623 |
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| Symbol | |
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| ID | 4077725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1730142 |
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| End bp | 1731089 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638006936 |
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| Product | serine peptidase |
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| Protein accession | YP_613618 |
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| Protein GI | 99081464 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0324508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGG AATTGACGGC GCTGGTTGCG GCCATTCGGG CGCAGCCCTG GGCGATCATG
CCGGATTATC TCGATGCGAT CGAAGCCATC GCGCTGCGCG CCCTTGATGA AGACGTGCTG
AAGCGGATCG CGCAGGACGG CCACATTCCG CGCCTCGAAG GCAATTTGTC GGCCGTTGCG
GCGGTAGGAA CGCGCCTCGA GGGAGCTGGG ATGAGCACTG TCCGCGACGG ATCCGCCGTG
GTGCCGATGT TCGGGCCGAT TTTTCCACGG GCATCGATGA TTAACGCTTC TTCCGACGGA
ACTTCCTTGA ACGCATTTAT GCGGGACATC CGCGTGGCGC AGGCGTCGAC CGATGTGCAT
CGGATCGTCG TGGTGGTGGA TAGCCCGGGC GGCGTGGTCT CCGGGCTCGG CGAAGCGTCT
GAAACGCTGC GTGCCACCAC AAAGCCGATC ACCGCCTTTG TCACCGGCAA CTGCGCCTCG
GCGGCTTATT GGCTCTGCAG CCAATTTGGC GAGATCGTGA TGGATCGCTC TGCGGCGGTC
GGCTCGATCG GGGTGGTCGC GTCGCTGTCC CGGCAGGAGG CGGCGGATAA CCAGGGGCGC
CGGTCTTATG AGATCGTCAG CAGCAATGCC CCGAACAAAC GTCCGGATCC GTCCACGGAA
GAGGGCCGGA CGGCCATCCA GAAAGACATC GACGCCATAG AGGAGGTGTT CATCGCAGAT
GTGGCCGCCG GTCGCCGCGT CTCGGCCGAT CGCGTGCGAA GCGATTTTGG CCGCGGCGCA
ATGCTCTCGG CCACGCGCGC CATCGAGGCG GGCATGGCTG ATCGCATTGG CACACTTGAG
GGGGTGCTGA CTGAAGGTTC CGGGCGCACC CGGAAAACTG GAGCGGGTCG CAGTGCGCAC
GCGGCCGCTG AAATCGAAAC GCGGCGGCGC GCCGCAATGA GGAACTGA
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| Protein sequence | MKQELTALVA AIRAQPWAIM PDYLDAIEAI ALRALDEDVL KRIAQDGHIP RLEGNLSAVA
AVGTRLEGAG MSTVRDGSAV VPMFGPIFPR ASMINASSDG TSLNAFMRDI RVAQASTDVH
RIVVVVDSPG GVVSGLGEAS ETLRATTKPI TAFVTGNCAS AAYWLCSQFG EIVMDRSAAV
GSIGVVASLS RQEAADNQGR RSYEIVSSNA PNKRPDPSTE EGRTAIQKDI DAIEEVFIAD
VAAGRRVSAD RVRSDFGRGA MLSATRAIEA GMADRIGTLE GVLTEGSGRT RKTGAGRSAH
AAAEIETRRR AAMRN
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