| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1588 |
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| Symbol | |
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| ID | 4078397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1696199 |
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| End bp | 1699753 |
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| Gene Length | 3555 bp |
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| Protein Length | 1184 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006901 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_613583 |
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| Protein GI | 99081429 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.635077 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGCGG CAGCCTTTTC GTTCGATTTC GGCGAGTATC ATTTTGAATA TGCCCGGCTG
GGGTCGTGTG ATGTTGACCT TCGTGTCGAC CCTCATCGCG AAGAGGCGTT TTTGTTTCTA
TTAGGGGTGG AATTTCAAGC TGCAGGTGGG GCAGAGCTTT GGAGCGGAAA TTGGCACCCG
ATGCCCGAAG TGACCGCTGA AAATCTCGCT GATTGCCTGG GAGTCCCATC GTCGCTGGTT
GAAGTCACTC GGCAGGAAGG GCCTGTGTTC GATTCCGATA GTAGCGAGTC CTTCCGGCTG
ACAACCTACA TCGGGTTGAC GTTCGATCTG CAAACAGACT CGATGGAACT TGCCGCGGGT
ACCTACGAGT TCTCCACTGA TACAAATGGG GAGATCAGAT ACCTAGGGTT CACTGATCGG
ATTGCGCCCG AGCTGACACC GCCAAGCGAT CAGTCCGCGA CTACCGATGC GGGACAGGCG
ACAGCGTCTT TGAATGTGAC CTCCCTTGGC TCCGCGTCAG ATAACGCAGA TTCGAGCATC
GACATCGCCT ACGCCATCGG CAGTACGACG ATCACCGGCT CCTACGACTT CCCAGTTGGA
GAGACGACCG TGACGATGTC TGCGTCTGAT GCTGCTGGCA ATGATGCCAC GCCGGTGACG
TTCAAAGTTG TCGTCTCCGA TGAGGAAAGC CCCGCCCTGA CTGCGCCTTC CAACCAGGAA
ATCACGACCG AATCGGGGGC CTCTACCGCA TCCCTTGATG TTACGGACCT CGGCTCGGTC
AGTGACAACG TAGATAGCAG CCTCAGCATC ACCTATTATG TCGGCAGCGC CGCGCTCTCC
GGGGCGTATG ACTTTCCGCT TGGCGACACC ACTGTGACAA TGATGGCATC CGATGCCGCC
GGGAATTCTG CGCAGGACAC ATTCACCGTG ACCGTAAACC CGGGCGATGT GACCGCGCCG
GTCCTGACAG CGCCTTCGGA TCAGACTGCG GCAACTGCCG TGGGGGCAAG CACAGCCGCG
CTTGATGTTA CAAGCCTTGG TTCGGGAAGC GACAACCTCG ATGACGTGGT GACGATCACC
TACAAGGTCG GCGACACCGT TTTGGACGGC GCCTATGACT TCCCGATTGG CGAGACGACT
GTGACGATGG ATGCCACCGA TGCGGCAGGC AATGCGGCAG CGCCAGTGTC GTTTACAGTG
ACGATCACCC CCGGCGACGC GACCGCGCCG GTCCTGACAG CGCCTTCGGA TCAGACTGCG
GCAACTGCCG TGGGGGCAAG CACAGCCGCG CTTGATGTTA CAAGCCTTGG CTCGGGCAGC
GACAACCTCG ATGACGTGGT GACGATCACC TACAAGGTCG GCGACACTGT GTTGGACGGC
GCCTATGACT TCCCGATTGG CGAGACGACT GTGACGATGG ATGCCACCGA TGCGGCAGGC
AATGCGGCAG CGCAAGTGTC GTTTACTGTG ACGATCACGC CCGGCGACGC GACCGCGCCG
GTCCTGACAG CGCCTTCGGA TCAGACTGCG GCAACTGCCG TGGGGGCAAG CACAGCCGCG
CTTGATGTTA CAAGCCTTGG TTCGGGCAGC GACAACCTCG ATGACGTGGT GACGATCATC
TACAAGGTCG GCGACACCGT GTTGGACGGC GCCTATGATT TCCCGATTGG CGAGACCACT
GTGACCATGG ATGCCACCGA TGCGGCAGGC AATGCGGCAG CGCAAGTGTC GTTTACAGTG
ACGATCACCC CCGGCGACGC GACCGCGCCG GTCCTGACAG CGCCCTCGGA TCAGACGGCA
TCCACCGAGC CAGACGCAAC CTCCACATCG TTGGACGTCA CAAGCCTTGG CTCGGGGAGC
GACGACATAG ATGACTCGGT GACGATCATC TACAAGGTCG GCGACACTGT GTTGGACGGC
GCCTATGACT TCCCGATTGG CGAGACGACT GTGACGATGG ATGCCACCGA TGTGGCAGGC
AATGACGCGG TGCAGGTTTC TTTTGTGGTC ACGGTCCTTG ATGGGACGCC GCCGCCAGAG
CCTACGATCA CCGATGTGGT CGTGAATGAC GATAAAACCC TGACGGTGAC AGGCACCGCG
CAGGCCGGGG CAACCGTCAC AGTCACCTTC CCTGATGGTT CCACGGTTGA GACAACTGCG
TCTGGCGCCG CGACCTCGGC AAAAGGGCGC GTGAACCGTG ACTCAACGGC GGTCTTTGCG
GCGGCGACCG GAACCTATAC GGCCACCTCT GCAACCCCGC AAACCAGCGG CGACGTCTCG
GCCTATTCGT CCACAACGGG GGGCGGCGCC TCGGCTTCCG CTTCGGTTGC GGTTGATGCG
ACTTCGCCCG ATGTGGTGCT GAGCGGCGGC CCGAGCGACG GCATCAGCGC CAATGAGAGC
TTTACCGTCA CCGCAACCTT CAACGAGGTA GTGACAGGCT TTAGCGCGAG CGATGTTGTG
GCACAAAACG CCAGCGTCAC CGCCGTGACA GGGTCGGGCA GCGACTATAC CATCAGCTTG
CGCGCAACCG GCGCAGGGAC TGTCACCGTC GAAGTGCCCG CAGGAGCGGC AGAGGACGCA
GCGTCAAACC CGACGAATGC CTCGAACACG CTTGTCTTTG ACGACACCAC GGTTGTGGAA
ACCCAGAAGC AGATTGCCGG CTTCCTCTAC AATCGCGCCA ACCAGCTGAT CTCGAACCAG
CCAGAGCTCA TTGGTTTCCT GTCGCAGACC GGGATCGGAT CGGGAACGCT TGATGCCTAT
GTCACGCGGG GCGCCGGGAA CTTCAATCTC GCGTCGCGTG GCGGTCTGCC GGTTTGGTTC
CGCCTGCAAG GCAGCTGGAG CGAGGATGAC ACAACCGAGG CGCGCTATGC CTTTGGGGCG
GTCGGCGGGC ATCTGACCCT GAGCGATCGG CTGCTGGTTG GGGCGATGCT CCAGTTCGAC
CATCTGCATC AGGATCAAGG CAGCCGCCGT GTCGAAGGCA CCGGTTGGAT GGTGGGGCCC
TATGCGGTGG CGCAGATCTC GGATCAGGCC CTCTACGTCG AAGGACGCGT GCTCTATGGC
CAATCCTCAA ACAAGGTTGC GCCCTTTGGC ACCTATGAGG ATTCCTTTGA CACAACGCGC
GTCTTGGCCC AACTGCGGGT CGCGGGGGAC ATCAAGAAGG GCGACACGAT CTTCACGCCC
TATATCGACG CCGCTTACGC CAACGAGGAG CAGGACGCCT ATGTCGACAG TCTCGGCAAC
AGCATCGGGG CGCAGAAAAT CCACCTGCGT CAGGCAAGCT TTGGTGTGGG CTTTGCCACG
CCCCTGCCGA TTGGCGCAGC AGACCAAGCG GTGCTGACCG GCGGTCTGGC GGGCGTCTGG
TCCTCCACCA GTGGCACGGC GGTCGCGGAC ACGGTGTTGC CAAGCTACGC GGGATGGCGC
GCCAAACTGG ACCTCGGTTT GCGCTATGTC TGGGAGAACG GCAGCAAACT CGCACTCTCC
GCGCGCTACG ACGGGCTTGG CAGCGCGGGC TACAAGGACG TCGGTCTCAG CCTGGATTAC
AGCCTGAAGT TCTGA
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| Protein sequence | MPAAAFSFDF GEYHFEYARL GSCDVDLRVD PHREEAFLFL LGVEFQAAGG AELWSGNWHP
MPEVTAENLA DCLGVPSSLV EVTRQEGPVF DSDSSESFRL TTYIGLTFDL QTDSMELAAG
TYEFSTDTNG EIRYLGFTDR IAPELTPPSD QSATTDAGQA TASLNVTSLG SASDNADSSI
DIAYAIGSTT ITGSYDFPVG ETTVTMSASD AAGNDATPVT FKVVVSDEES PALTAPSNQE
ITTESGASTA SLDVTDLGSV SDNVDSSLSI TYYVGSAALS GAYDFPLGDT TVTMMASDAA
GNSAQDTFTV TVNPGDVTAP VLTAPSDQTA ATAVGASTAA LDVTSLGSGS DNLDDVVTIT
YKVGDTVLDG AYDFPIGETT VTMDATDAAG NAAAPVSFTV TITPGDATAP VLTAPSDQTA
ATAVGASTAA LDVTSLGSGS DNLDDVVTIT YKVGDTVLDG AYDFPIGETT VTMDATDAAG
NAAAQVSFTV TITPGDATAP VLTAPSDQTA ATAVGASTAA LDVTSLGSGS DNLDDVVTII
YKVGDTVLDG AYDFPIGETT VTMDATDAAG NAAAQVSFTV TITPGDATAP VLTAPSDQTA
STEPDATSTS LDVTSLGSGS DDIDDSVTII YKVGDTVLDG AYDFPIGETT VTMDATDVAG
NDAVQVSFVV TVLDGTPPPE PTITDVVVND DKTLTVTGTA QAGATVTVTF PDGSTVETTA
SGAATSAKGR VNRDSTAVFA AATGTYTATS ATPQTSGDVS AYSSTTGGGA SASASVAVDA
TSPDVVLSGG PSDGISANES FTVTATFNEV VTGFSASDVV AQNASVTAVT GSGSDYTISL
RATGAGTVTV EVPAGAAEDA ASNPTNASNT LVFDDTTVVE TQKQIAGFLY NRANQLISNQ
PELIGFLSQT GIGSGTLDAY VTRGAGNFNL ASRGGLPVWF RLQGSWSEDD TTEARYAFGA
VGGHLTLSDR LLVGAMLQFD HLHQDQGSRR VEGTGWMVGP YAVAQISDQA LYVEGRVLYG
QSSNKVAPFG TYEDSFDTTR VLAQLRVAGD IKKGDTIFTP YIDAAYANEE QDAYVDSLGN
SIGAQKIHLR QASFGVGFAT PLPIGAADQA VLTGGLAGVW SSTSGTAVAD TVLPSYAGWR
AKLDLGLRYV WENGSKLALS ARYDGLGSAG YKDVGLSLDY SLKF
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