| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1571 |
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| Symbol | deoA |
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| ID | 4078380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1678773 |
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| End bp | 1680077 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638006884 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_613566 |
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| Protein GI | 99081412 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGCGC GCGCGGTCAT TGCCCGGTTA AGGCAGAAAC ACACCCCAAG CACCGAGGAG
CTGCGCTGGT TTGCCGAGGG GCTTGCCAGT GGCGCCGTCA GCGACGCGCA GGCGGGCGCC
TTTGCTATGG CGATCTGTCT CAACGGGTTG CCAGCCGCGG CGCGCTCTGA CCTGACACTT
GCGATGCGCG ACAGCGGCGA TGTTCTGACG TGGGATCTGC CGGGGCCGGT GGTGGACAAA
CACTCGACCG GTGGGGTCGG CGATTGCGTG TCGCTTCTTC TGGCGCCTGC GCTTGCGGAA
TGTGGCGCTT ATGTCCCGAT GATCTCGGGA CGCGGTCTTG GGCACACCGG TGGCACGCTC
GACAAGCTGG AGGCGATCCC CGGTCTAAGC ACCGAGGTCA CGCAAGATCG GCTGGCGGGA
ATTGTGGCCG ACGTTGGCTG CGCCATCGTG GGGGCAACCG CGCGGATTGC CCCGGCGGAC
AAGCGGCTTT ATGCGGTGCG CGATGTGACG GCCACGGTGG AGAGCCTCGA TCTGATTACA
GCATCGATCC TTTCGAAAAA GCTGGCTGCC AGCCCCGAGG CATTGGTGCT GGATGTCAAA
ATCGGCTCGG GCGCCTTTAT GAAAACTGTG GAGGAGGCGC GCGCTTTGGC GACCTCTCTG
GTGGAAACCT CAAAGGCGGC GGGGTGTCCG ACGCAGGCGC TGATCACCGA CATGAACCAG
CCGCTTGTTC CAGCCTTGGG CAATGCGCTT GAGGTTGCCG AAGTGGTGCG GGCGCTCACC
GGTCAGTCGA GCGGGCAGAT CATCGAGATC ACCGTGGCAC TTGGTGGCGC GCTGTTGCAG
CAGGCGGGAC TTGCCCCCAA CCAAGAGGCG GGCGAGACGC AAATTGCCGC CGCAATCGCC
GAAGGTCGCG CGGCAGAGCG GTTTGCCCGA ATGATTGCCG CGCAGGGTGG TCCGTCCACA
GAGCTTGAGA CATGGGCGCG CGCGCTGCCG CAAGCACCGG TCTGCGCAGA GGTCACGGCC
GAGGACGCAG GCTATGTTGC GGCGATCGAC GGCGAGGCCC TTGGTCTGCT GGTGGTTCGG
CTGGGCGGCG GGCGTATGGT TGAAAGCGAC CGTATCGACC CTGCGGTCGG GATCTCGGAC
CTGCTGCACT TGGGGGCCAA AGTGGCCAGG GGCGATGTCA TTGCGCGCGT TCATGCCGCC
CACGCAGAGG CCGCGCAAGA TGCGATCTCG GCCTTGCGGG CGGCGGTGAG GCTTGCACCT
GCCGCACCCG ACCTGCCGCC GCTGTTGCAT GAGAGGATCA GCTGA
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| Protein sequence | MDARAVIARL RQKHTPSTEE LRWFAEGLAS GAVSDAQAGA FAMAICLNGL PAAARSDLTL
AMRDSGDVLT WDLPGPVVDK HSTGGVGDCV SLLLAPALAE CGAYVPMISG RGLGHTGGTL
DKLEAIPGLS TEVTQDRLAG IVADVGCAIV GATARIAPAD KRLYAVRDVT ATVESLDLIT
ASILSKKLAA SPEALVLDVK IGSGAFMKTV EEARALATSL VETSKAAGCP TQALITDMNQ
PLVPALGNAL EVAEVVRALT GQSSGQIIEI TVALGGALLQ QAGLAPNQEA GETQIAAAIA
EGRAAERFAR MIAAQGGPST ELETWARALP QAPVCAEVTA EDAGYVAAID GEALGLLVVR
LGGGRMVESD RIDPAVGISD LLHLGAKVAR GDVIARVHAA HAEAAQDAIS ALRAAVRLAP
AAPDLPPLLH ERIS
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