| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1564 |
|---|
| Symbol | |
|---|
| ID | 4078373 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1670697 |
|---|
| End bp | 1671362 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638006877 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_613559 |
|---|
| Protein GI | 99081405 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.641188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTTT CGCGTGGGCG CAACTACGTC TTTATTCATA TCCCGAAGAC CGGTGGCACC
GCGCTTGCAC TGGCGCTTGA GTCGCGCGCG ATGGCCGGAG ACGAGATGCT CGGCGACACG
CCCAAGGCCG TCAAACGCCG CCGCCGCCTG CATGGCACCG AGACGCGCGG GCGATTGTGG
AAGCATTCAA CGCTTGCAGA CATCGAAGGT CTCGCCAGCC GCGAAGAACT GCGCCAGATG
TTTGCCTTTA CCCTTGTGCG CAATCCCTTT GATCGCGTGG TGAGCCTGTA TCACTGGCTC
AAAGAGCAAT CCTTCGATCA TCCGATGGTG CCACTGGCGC ATTCGCTGCC GTTTACCAGC
TTTGTGACCG ATCCTTTGGT GATGCGCGCG CTCAAATCTC AACCGGCTCT GTCTTATATG
ATGCAGTCGG ACGGGTATGA GCATTGCAGC CTTTACATAA GGCTCGAATA TTTCGCTAAG
GATGCCGCAC CTTTGTTCGA TCACTTGGGA TTCGCATTGG AATTGCCTCG CGTGAATGAG
TCGCGTCGCG ATCCGGACTG GCGTGTTTAC TATGATTCAC AGGCGGTTGA TGCCGTAAGG
ACGTGCTGCC AGCTCGAAAT CGAACGATTT GAATACTCTT TTAACGATTA CCCCCTATCC
CTTTGA
|
|---|
| Protein sequence | MILSRGRNYV FIHIPKTGGT ALALALESRA MAGDEMLGDT PKAVKRRRRL HGTETRGRLW
KHSTLADIEG LASREELRQM FAFTLVRNPF DRVVSLYHWL KEQSFDHPMV PLAHSLPFTS
FVTDPLVMRA LKSQPALSYM MQSDGYEHCS LYIRLEYFAK DAAPLFDHLG FALELPRVNE
SRRDPDWRVY YDSQAVDAVR TCCQLEIERF EYSFNDYPLS L
|
|---|
| |