| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1540 |
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| Symbol | |
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| ID | 4075838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1647517 |
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| End bp | 1649139 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006853 |
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| Product | putative monovalent cation/H+ antiporter subunit D |
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| Protein accession | YP_613535 |
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| Protein GI | 99081381 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.010926 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCATC TTCTGATTGC GCCCATCGTG CTGCCCGCAT TGGTGGCGCC ATTCATCATT
ATGACCTTGC GCTATCACAT TGATTTGCAG CGCATATTCT CTTTGACAAC GAATGTGCTA
CTGGTTGCCA TCGCGATGGC GCTGGCGGTA CAGGCCGCAG ATGGCACCGT GCAGGTCTAC
GAGCTCGGCG ACTGGCAGGC GCCCTTTGGC ATCGTGCTGG TGCTTGATCG GCTCTCGGCC
ATGATGGTGC TGCTGACCAC CGTTCTGGCC CTTGCCGTAA ACCTCTATGC AATCGGCAGC
AAATGGGACG AGCGCGGCGC GAACTTTCAT GCGCTCTATC TCTTTCAGCT CATGGGCGTC
ATCGGCGCGT TCCTGACGGG CGATGCGTTC AACCTCTTTG TGTTCTTCGA AGTGCTCTTG
ATCGCGTCCT ACGGGCTAAT GATCCACGGC GGTGGTGCCC GGCGGTTTCA GGCAGGCGTG
CAATATGTGG TGTTCAACCT TCTGGGTTCG ACGCTGTTTC TGTTTGCGCT TGGCACCATC
TACGGGGTGA CCGGCACGCT CAACCTCGCG GATCTTGCGC AGCGCGTCGC CGAACTTCCG
GCTGAAGACA GCGCCCTTAT TCGCGTGGGC GCGGTGATGC TGCTTCTGGT CTTTGCGATC
AAAGCCTCGC TGTTGCCGCT GCATTTCTGG CTGCCAGCCT CCTATGCCAA TGCACCCGCG
CCGGTGGCCG CGCTCTTTGC GATCATGACC AAAGTTGGCG CCTATGCGAT CCTGCGCGTC
TATACGCTGG TGTTCGGACC CGACGTCGCG GTGGTCGATG GGCTGGTGGA AAGCTGGTTG
TTGCCTGCCG CGCTTTTGAC CATTGCCATC GGGGCGATCG GAGTTCTGGG TTCCAAGGAA
ATCGGCAAGC TGATGTCCTT TGGCGCGATC ACCTCTGTGG GCACGCTGCT CACGGCGATT
GCGCTCTTTA CGCCCGAGGC CACCTCGGCC GCGCTCTACT ACACGGTGCA TTCGACGCTG
GCAGCCGCAG CGCTGTTCCT CGTGGCCGAC ATGGTGCGCG AACGCCAAGG CGGGGACATA
GCCCCCAAGC CAGTCATGGC GCAAAGCGGG CTCATCTCGG TGCTCTTTTT CGTGGCGGCC
ATCGCCACGG CGGGCATGCC GCCTCTGTCC GGTTTCCTTG GCAAACTGCT GATCCTTGAC
GCGGCGCGCG ACAATACGCT TGCAGTCTGG GTCTGGGGCG TGATCCTCGT GAGCTCTCTT
GTGACCATCA TGGGATTTGC CCGCGCAGGC ACTCTGATCT TCTGGAAAAG CCATGGTCTG
CCCTCCGAGC AGCCCGCGGA GGAAGACGCA AGCGAGAGCG CCACAACGAC GACAGAGCGC
ACATCCGCCC TGCCCTTCGT GGCTTGTTTC TCGCTTCTGG CAGGGCTGGT CGCGCTGACC
CTCTTTGCCG GACCGGTGAC CCGCTATACC ACGGCCACCG CTGCGGATCT CTTTGCGCCC
GAGGCCTATA TCGAGACGGT CCTTGCAAAC CGCGACCGCC CGGTAGTTGA GCCCGACGCA
GATGGCACAG ACAAGGCCAA GGACGATGGC GCCGCTGCGC CCAAATCGGA GGAGAGCAAC
TGA
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| Protein sequence | MNHLLIAPIV LPALVAPFII MTLRYHIDLQ RIFSLTTNVL LVAIAMALAV QAADGTVQVY
ELGDWQAPFG IVLVLDRLSA MMVLLTTVLA LAVNLYAIGS KWDERGANFH ALYLFQLMGV
IGAFLTGDAF NLFVFFEVLL IASYGLMIHG GGARRFQAGV QYVVFNLLGS TLFLFALGTI
YGVTGTLNLA DLAQRVAELP AEDSALIRVG AVMLLLVFAI KASLLPLHFW LPASYANAPA
PVAALFAIMT KVGAYAILRV YTLVFGPDVA VVDGLVESWL LPAALLTIAI GAIGVLGSKE
IGKLMSFGAI TSVGTLLTAI ALFTPEATSA ALYYTVHSTL AAAALFLVAD MVRERQGGDI
APKPVMAQSG LISVLFFVAA IATAGMPPLS GFLGKLLILD AARDNTLAVW VWGVILVSSL
VTIMGFARAG TLIFWKSHGL PSEQPAEEDA SESATTTTER TSALPFVACF SLLAGLVALT
LFAGPVTRYT TATAADLFAP EAYIETVLAN RDRPVVEPDA DGTDKAKDDG AAAPKSEESN
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