| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1453 |
|---|
| Symbol | |
|---|
| ID | 4077750 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1551847 |
|---|
| End bp | 1553010 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638006764 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_613448 |
|---|
| Protein GI | 99081294 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.445258 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCAAA CGCGCTTCTT TAAAATGGCG CAACGAGCAG ATTCAATTTT CGACGGAGGC
ATCACAGGCA TGCCCACCCA TGACTTTTTT GTCTACACGC CGGATGCGCT GACGTTTTCC
GGCGGTACGA TCCGCGTAAA CTCTGGTTTT GACCCGCTTT CTGATCGGCG CGTTGTGTCT
CTCACAGATG ACGATTCCAC GCTGGATGGG GATTTCACCC GAAATGAGCG CGGTATCGAC
AGCAACCAGC GGGCAACGGT TTTTGAAAGC GATGGCAGCA CATTGGCGCG TATCGGCGGA
GATTTTGTGC AAAACGACCA AGTCTATGCA GAAAATCAAT ATGTGCTGAC CGGCGATGAT
GGCAGCGAAA TTACCGTTTA TGCGCTGGAA AGCGGCGGCA CACTTATTGG CTATCTTCCA
ACTGCGCCGC TTTTACGGGA TGTGAATTAC AGCTACCGGA CCCACAATGT CATCAACGAT
GACGAGCTGA CGGGCTCCTA TCAATATTGG TATCGTCAAT ACCTCGGCGA GGACGCGACC
GATGCCGGAT CCTATGATGA CATTCAGGGG GCCGTGATCG TGTGTTTTAC GCCCAACGCG
CAGGTCACCA CCCCGGAAGG TCCGCGCCGC ATCCGGGATC TTGCCGTGGG CGATCGCGTG
CTGACACGGG ACAATGGTTA TCAGACCCTG CGGTGGAAAT ATCACCGCCG CCTGTCACGC
GCAGATCTCG ACCGTCAACC GCATCTGGCG CCAATCATCT TTGAGCCAGA CGCACTGGCG
CCGGGCTGCC CCAAACGCCG CCTCAAAGTG TCTCCACAGC ACCGGATTCT CATTGAATCC
CACATGAGCG GGCTCCTCTT TGCCAGCAAT GCCATCCTCG CACCGGCCAA GGGGCTGGTG
AACGGCACCA GTGTGCGACA GGATCAAAGT GGCATGCCGG TCACCTATGT GCATCTGATG
TTTGATCGCC ATGAGGTGAT CGAGGCCGAT GGGCTCTATT CCGAAAGCTA CCATCCCGGT
GCCTGGGCGC TTGCGGCTGC CGAAGATGCG GTCCGGCGCG AGCTTTTTGA GATATTCCCG
GCTCTGGAGG CGGATCTCAA TGCCTATGGC CCTACATGTT ATCCCTCTAT AAATGCTCAA
GAAGCACGTC TACTGAAGGC ATGA
|
|---|
| Protein sequence | MRQTRFFKMA QRADSIFDGG ITGMPTHDFF VYTPDALTFS GGTIRVNSGF DPLSDRRVVS
LTDDDSTLDG DFTRNERGID SNQRATVFES DGSTLARIGG DFVQNDQVYA ENQYVLTGDD
GSEITVYALE SGGTLIGYLP TAPLLRDVNY SYRTHNVIND DELTGSYQYW YRQYLGEDAT
DAGSYDDIQG AVIVCFTPNA QVTTPEGPRR IRDLAVGDRV LTRDNGYQTL RWKYHRRLSR
ADLDRQPHLA PIIFEPDALA PGCPKRRLKV SPQHRILIES HMSGLLFASN AILAPAKGLV
NGTSVRQDQS GMPVTYVHLM FDRHEVIEAD GLYSESYHPG AWALAAAEDA VRRELFEIFP
ALEADLNAYG PTCYPSINAQ EARLLKA
|
|---|
| |