| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1444 |
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| Symbol | dmdA |
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| ID | 4078074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1542571 |
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| End bp | 1543728 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006755 |
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| Product | putative dimethyl sulfoniopropionate demethylase |
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| Protein accession | YP_613439 |
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| Protein GI | 99081285 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.8924 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.101905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCT CGCCCTCAAC TCATGGTATG AAAGGGTTTG CCATGACCGT TCTGAAACCT
GCCATTTCCC TCTCTCGGCG CCTGCGTCGA ACCCCTTTTT CGGAGGGCGT CGAAGCCGCT
GGAGTCAAAG GCTACACCGT CTACAATCAC ATGCTGCTGC CCACGGTGTT TGAGAGTGTC
GAAGCCGACT ACCACCACCT CAAGCGTCAT GTGCAAGTCT GGGACGTCGC CTGCGAACGC
CAGGTGGAAC TGCGCGGCCC CGACGCCGGA CGCCTGATGC AGATGCTGAC CCCGCGCGAT
CTGCGTGGCA TGATGCCCGG TCAATGTTAC TATGTCCCCA TCGTCGATGA GACCGGCGGG
ATGCTCAATG ATCCCGTAGC CGTAAAGCTC GCAGAGGATC GTTGGTGGAT CTCCATTGCG
GACAGTGATC TGTTGTACTG GGTCAAGGGG ATCGCAAACG GCTGGCGCCT TGATGTGCTG
GTGGATGAAC CGGATGTTTC GCCGCTTGCG GTGCAGGGCC CCAAGGCAGA GGACTTGATG
GCGCGTGTCT TCGGCGAGAC TGTGCGCGCG ATCCGGTTTT TCCGCTTTGG CGTCTACCAG
TTCGAAGGAC GCGATCTGGT GGTGGCAAGG TCGGGCTACT CAAAGCAGGG TGGGTTCGAG
ATCTACGTCG AAGGCGGCGA TCTTGGCATG CCGCTCTGGA ACCGTCTGTT TGAGGCTGGC
GCAGATCTCG AGGTGCGTGC GGGCTGTCCC AACCTCATTG AGCGGATCGA GAGCGGTCTT
CTGAGCTACG GCAATGATAT GACCGACGAC AACACACCGC ACGAATGCGG CCTTGGGCGG
TTCTGTAACA CCCACACGGC CATTGGGTGT ATCGGGCGTG ATGCGCTGCT GCGGGTGGCC
AAGGAAGGCC CGGTGCAGCA GATCCGCCCG ATCGAGATTT CCGGCGAAGC GGTGCCGCCC
TGTGATCAAT TCTGGCCGCT CGTTGCAAAT GGGCGTCGTG TCGGTCGGGT CTCCTCGGCC
ACCTGGTCGC CGGATCATGC CACGAATGTT GCGATCGGCA TGGTCAAGAT GACGCATTGG
GATGCGGGGA CGCAGCTAGA GGTGGAGACA CCGGATGGAA TGCGTACTGC TCTGGTGCGC
GAAAATTTCT GGAATTAA
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| Protein sequence | MRRSPSTHGM KGFAMTVLKP AISLSRRLRR TPFSEGVEAA GVKGYTVYNH MLLPTVFESV
EADYHHLKRH VQVWDVACER QVELRGPDAG RLMQMLTPRD LRGMMPGQCY YVPIVDETGG
MLNDPVAVKL AEDRWWISIA DSDLLYWVKG IANGWRLDVL VDEPDVSPLA VQGPKAEDLM
ARVFGETVRA IRFFRFGVYQ FEGRDLVVAR SGYSKQGGFE IYVEGGDLGM PLWNRLFEAG
ADLEVRAGCP NLIERIESGL LSYGNDMTDD NTPHECGLGR FCNTHTAIGC IGRDALLRVA
KEGPVQQIRP IEISGEAVPP CDQFWPLVAN GRRVGRVSSA TWSPDHATNV AIGMVKMTHW
DAGTQLEVET PDGMRTALVR ENFWN
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