| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1442 |
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| Symbol | |
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| ID | 4078072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1540223 |
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| End bp | 1541452 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006753 |
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| Product | aminotransferase, class V |
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| Protein accession | YP_613437 |
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| Protein GI | 99081283 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0520] Selenocysteine lyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.259917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.109823 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCG CCATGGATAT CGAATTTGTC CGCAAACAAT TTCCGGCATT TGAACAGCCC
TCTTTGCAGG GTCAGGCCTT CTTTGAGAAT GCAGGCGGCT CTTACACCTG CCGGCAGGTG
ATCGACCGCC TGTTTCGATT TTACACCGAG CATAAGGTCC AGCCCTACGC GCCTTATGCC
GCCTCCGAGG CAGCCGGCGC CGAGATGGAT GAAGCGCGCA GTCGTCTGGC GGCGATGCTG
GGTGTCTCTG CGCAGGATCT GAGCTTCGGT CCTTCGACAA CCCAGAATAC CTATGTGCTG
GCGCAGGCCT TCCGGGGCTT CTTGAAGCCG GGCGAGAAGA TCATCGTTAC CAATCAGGAC
CATGAGGCCA ACTCCGGCCC GTGGCGACGC TTGGCCGACG AGGGCATCGA GGTGCTGGAG
TGGCAGATCG ATCCTGCCAC CGGCCATCTT GAACCGAGCG CGCTGGAGGA TCTCTTGGAC
GAGAGCGTGC GGCTGGTCTG TTTTCCCCAT TGCTCCAATG TGGTGGGCGA GATCAATCCG
GTCACGGAAA TCACTGCGCT GGCCCATGCT GCGGGGGCTT TTGTCTGCGT TGATGGCGTC
TCTTACGCGC CGCATGGTTT GCCGAACGTG GGTGAACTGG GGCCGGATAT CTATTTGTTC
TCCGCCTATA AAACCTATGG CCCTCATCAA GGGATCATGG TGATCAATCC CGCTCTTGCC
GAGCTTTTGC CCAATCAGGC GCACTACTTT AACGGGGATG TTCCTTACAA ACGCTTCACC
CCCGCCGGAC CCGATCACGC GCAGGTCGCC GCCTGTGCGG GAATGGTCGA CTACTTCGAG
GCGCTCGCCG AACATCACAA CGCACCTGAG ATCACAGGCA CAGGGGCGGG CGCCTTTGTG
CACGATCTGA TGCGCGAGCA GGAGATCTCC TTGTTGCAGC CGCTCCTGGA TGCGGTGAAG
GGGCGAAACG ATGTGCGCTT GCTTGGCCCC GCGAACGCCA AAGAGCGTGC CCCGACCGTC
GCGCTTGCGC TTGGGCGGGC AGCAGAGCCC GTTGCCAAGC AATTGGCAGA GCTTGGGATC
ATGGCGGGGG GCAGCGACTT TTACGCAGTG CGTGCGCTCA GGGCAATGGG GGTCGACCCC
GCGCAGGGCG TGCTGCGGCT GAGTTTTACT CACTATACCG ATCAATTGGA GGTGACAGCG
CTGATCGAGG CCCTAGATCG CGTCCTGTAA
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| Protein sequence | MKRAMDIEFV RKQFPAFEQP SLQGQAFFEN AGGSYTCRQV IDRLFRFYTE HKVQPYAPYA
ASEAAGAEMD EARSRLAAML GVSAQDLSFG PSTTQNTYVL AQAFRGFLKP GEKIIVTNQD
HEANSGPWRR LADEGIEVLE WQIDPATGHL EPSALEDLLD ESVRLVCFPH CSNVVGEINP
VTEITALAHA AGAFVCVDGV SYAPHGLPNV GELGPDIYLF SAYKTYGPHQ GIMVINPALA
ELLPNQAHYF NGDVPYKRFT PAGPDHAQVA ACAGMVDYFE ALAEHHNAPE ITGTGAGAFV
HDLMREQEIS LLQPLLDAVK GRNDVRLLGP ANAKERAPTV ALALGRAAEP VAKQLAELGI
MAGGSDFYAV RALRAMGVDP AQGVLRLSFT HYTDQLEVTA LIEALDRVL
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