| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1398 |
|---|
| Symbol | |
|---|
| ID | 4075891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1490751 |
|---|
| End bp | 1492970 |
|---|
| Gene Length | 2220 bp |
|---|
| Protein Length | 739 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006708 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_613393 |
|---|
| Protein GI | 99081239 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.695979 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAGG CCGACGCGCG CGCTGAGTTT GAGGCGCTGC AGACCAAGAT CGAAAAAGCC
GATCACGACT ATCACCAAAA AGACGCGCCC ACTCTGTCGG ATGCGGATTA CGATCGCCTC
AAGCGTCGCT ATCTGGCCCT TGCAGACGCC TTTCCCATCT TGGCCAAAGA CGGCACCCGT
GTAGCGAGCG TTGGCGCGCC GGCCGCCTCT GGCTTTGGCA AGGTCACCCA TGCGCAACGT
ATGATGTCCC TCGGAAATGC GTTTGAAGAT CAGGATGTTG AGGATTTTGC TGTCGGGTTG
CGCCGCTATC TGGGGCTCTC CTCCGAGGCT CCGCTCGCCT TCACCGCAGA GCCGAAAATT
GACGGGCTTT CGCTTTCCCT GCGCTATGAG GCGGGCAAAC TTGTGCAAGC TGCAACCCGC
GGCGATGGCG CGGTGGGGGA AAACGTCACC GAAAACGCCC GCACCATCAG CGATATTCCG
CAAGAAATCT CTGGCGCGCC CGAGGTCCTG GAAGTGCGTG GCGAAGTCTA CATGAGCCAC
GCAGATTTCG AGGCTCTGAA TGCGCGTCAT GCCGAGACCG GCGGCAAGAT ATTTGCCAAC
CCGCGCAATG CGGCGGCGGG CTCGCTGCGC CAGCTCGATG CTGAAATCAC CCGCGCCCGA
CCTTTGCGGT TCTTTGCCTA TAGCTGGGGA GAGCTGTCTG AACCTCTCGC AGAAACGCAA
ATTGACGCGA TCGAGAGACT GGCGTCCCTT GGCTTTCAGA CCAATCCGCT GACACGCTGC
TGCGAGCAGA TTTCCGAGCT GCTCGCGCAT TATCACGCCA TCGAGGAGCA GCGCGCGGAT
CTCGGCTATG ACATAGACGG AGTTGTTTAC AAGGTGAACG ATCTGTCCTT GCAAGAGCGT
CTTGGCTTTC GGTCAACGAC GCCACGTTGG GCCATTGCGC ATAAGTTTCC GGCCGAGCTG
GCCTGGACCC ACCTTGAGGG GATCGACATT CAGGTTGGAC GCACCGGCGC CCTGAGCCCG
GTTGCGCGTC TGCATCCGGT GACCGTGGGC GGTGTGGTTG TCTCCAACGC CACGTTGCAC
AACGAAGACT ATATTGCGGG ACTTGATTCC AAAGGCGCTC CGATCCGGGG CGGCAAGGAC
ATCCGCGTCG GGGACTGGGT GCAGATCTAC CGCGCGGGCG ATGTGATCCC AAAGGTCGCC
GACGTCGATC TGAGCCGACG CCCCGAGGGC ACGGAGCGTT ATGCGTTCCC CACGCGCTGT
CCCCGATGCG ACAGCCCCGC GGTGCGCGAA GAAGGTGATG CTGTGCGACG TTGCAGCGGC
GGGTTGATTT GCCCGGCGCA GGCGGTTGAG AAACTCAAGC ATTTTGTCTC GCGCGCGGCT
TTTGACATCG AAGGGCTGGG CGCCAAACAG GTGGAACAAT TCCACAGCGA TGGATGGGTG
AAGGAACCCG CCGATATCTT TGAGCTCCAA CAGAGATATG GCTCTGGTTT GCAGCAGTTG
AAAAACCGCG AAGGCTGGGG GGAGAAATCT GCGTCTGCTC TGTTTGCAGC CATCGAGGAC
AAGCGGCGAA TTGAGTTTGC CCGGCTCATT TTTGGCCTCG GGATCCGCCA TGTGGGAGAA
GTTGCCGCCA AGGACCTTGC CCTGCATTTC CGGACCTGGA GCGCCCTGGC GGAGGCCGCG
GATCTCGCGC GCGCAGCGGC GTTGGCGCAC CGGGCTGCGG ATGAAGCCGA GATTGTTGAA
CGGCAGGAGG CACAAGCCAG TGCGCGCCGT GCAAAAATCT CTGAGGCCCG AAATGCCGCG
GTTGCAACCT GTGCAGTTGC GCCGGACTCG CAGGCGGCGT GGGATGATCT CATCAGTGTG
GATGGGCTTG GCCCAACCGT GGCTTTGTCT TTGTCGGATG CCTTTGCCAA CCCCGAAGAA
CGCGCCGCTT TTGATCGTCT GATCGCGCAT CTAGAGATTA TTGAACCGGA TGCCCCGGCA
GATGACAGCC CCGTTGCGGG CAAGACCGTC GTCTTTACCG GCACGCTCGA AAAAATGACC
CGCGCCGAGG CAAAGGCGCG CGCCGAGGCG CTTGGGGCCA AAGTGTCTGG GTCGGTGTCA
AAGAAAACCG ATATTCTTGT GGCCGGACCG GGCGCGGGGT CGAAGGCCGC CAAGGCTGCA
GAGCTCGGCA TTCAGACATT GGATGAGGAC GGATGGCTGG ACTTGATCGG GCAGGCATAG
|
|---|
| Protein sequence | MDEADARAEF EALQTKIEKA DHDYHQKDAP TLSDADYDRL KRRYLALADA FPILAKDGTR
VASVGAPAAS GFGKVTHAQR MMSLGNAFED QDVEDFAVGL RRYLGLSSEA PLAFTAEPKI
DGLSLSLRYE AGKLVQAATR GDGAVGENVT ENARTISDIP QEISGAPEVL EVRGEVYMSH
ADFEALNARH AETGGKIFAN PRNAAAGSLR QLDAEITRAR PLRFFAYSWG ELSEPLAETQ
IDAIERLASL GFQTNPLTRC CEQISELLAH YHAIEEQRAD LGYDIDGVVY KVNDLSLQER
LGFRSTTPRW AIAHKFPAEL AWTHLEGIDI QVGRTGALSP VARLHPVTVG GVVVSNATLH
NEDYIAGLDS KGAPIRGGKD IRVGDWVQIY RAGDVIPKVA DVDLSRRPEG TERYAFPTRC
PRCDSPAVRE EGDAVRRCSG GLICPAQAVE KLKHFVSRAA FDIEGLGAKQ VEQFHSDGWV
KEPADIFELQ QRYGSGLQQL KNREGWGEKS ASALFAAIED KRRIEFARLI FGLGIRHVGE
VAAKDLALHF RTWSALAEAA DLARAAALAH RAADEAEIVE RQEAQASARR AKISEARNAA
VATCAVAPDS QAAWDDLISV DGLGPTVALS LSDAFANPEE RAAFDRLIAH LEIIEPDAPA
DDSPVAGKTV VFTGTLEKMT RAEAKARAEA LGAKVSGSVS KKTDILVAGP GAGSKAAKAA
ELGIQTLDED GWLDLIGQA
|
|---|
| |