Gene TM1040_1390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1390 
Symbol 
ID4075883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1483581 
End bp1484003 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content59% 
IMG OID638006700 
Productphenylacetic acid degradation-related protein 
Protein accessionYP_613385 
Protein GI99081231 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism 
TIGRFAM ID[TIGR00369] uncharacterized domain 1 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTGG TGTTTGATAA AGACGGCCTC AGCGCCTATC TCGAGGAGGT CTTTCCTCAG 
ATACAGGGCG AGTTCAGCAT CGATGCGCTT GCAAAAGGCG AGATCACCAT GCGCCTCAAC
GTGCAGGAGC GGCATTTGCG TCCGGGAGGA ACGGTTTCAG GCCCGTCGAT GTTCGCGCTC
GCTGATGTCT CGGTCTACGC CTTGGTTTTG GCGCACCTCG GACGAGAGGC GCTGGCGGTC
ACGACCAATG CCTCGCTCGA TTTTATGCGC AAACCCGAAA GCGGACGCGA TCTCTTGGGG
CAAGCACGCC TGTTGAAACT GGGGCGCACA TTGGCAGTCG GGGATATCCT GTTGTTCTCC
GAAGGGATGG AGGCCCCGGT CGCGCGCTCA ACCATGACCT ATTCCATCCC GCCGAAACGC
TAA
 
Protein sequence
MELVFDKDGL SAYLEEVFPQ IQGEFSIDAL AKGEITMRLN VQERHLRPGG TVSGPSMFAL 
ADVSVYALVL AHLGREALAV TTNASLDFMR KPESGRDLLG QARLLKLGRT LAVGDILLFS
EGMEAPVARS TMTYSIPPKR