| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1363 |
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| Symbol | |
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| ID | 4076380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1457721 |
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| End bp | 1458707 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006673 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_613358 |
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| Protein GI | 99081204 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.511706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCTTTT CAGTTGGACC CACACATCTC GATCCCCCCG TCGCTCTGGC GCCCATGGCC
GGGATCACTG ACCGCCCGTT TCGGGATCTG GTGCGCTCTT TCGGGGCGGG CCTAGTGGTG
AGCGAGATGG TCGCCAGTCA GGAGATGGTT CAAGCCAAGC CCGGCGTGCG CGAGAAGGCG
GAACTGAGCG CCGATGTGGA GAATACCTCG GTTCAGATCG CCGGGCGCGA CGCGTATTGG
ATGGCAGAGG CCGCGCGTCA GGTGGCAGAT CGTGGGGCGC GGATGATCGA CATCAACATG
GGATGTCCGG CAAAGAAAGT GACCAACGGC TATTCGGGCT CTGCGCTCCT GAAGACCCCC
GATCACGCGC TGTCGTTGAT TGAGGCAGTC GTTCAGGCGG TGGATGTGCC TGTCACGCTC
AAGACCCGGT TGGGGTGGGA CGATAACTGT CTCAATGCCG CTGATGTGGC GCGCCGCGCC
GAAGCCGCGG GTGTCCAGAT GGTCACTATC CATGGTCGTA CCCGGTGCCA GTTTTACAAA
GGTCATGCTG ACTGGGCTGC GATCTCGGAG ATCAAGAATG CGATCTCTGT TCCCTTGCTG
GCCAATGGCG ATATTGTCGA TGCAAAAAGC GCGGGCAAGG CGCTCTCAGA CTCCGGAGCG
GATGGCGTCA TGATCGGGCG CGGTGTGCAG GGAAGACCCT GGCTTCTGGC TCAGATCGCG
CATGATCTCT GGGGCACGGC TGCTCCGGAC GTTCCCGAAG GGCGCGCATT TATTGATCTG
GTTTCAAAGC ACTACGAGGC GATGCTTGCC TTTTATGGGG CGGAGTTGGG CCTCCGCGTC
GCGCGCAAGC ACCTAGGCTG GTATATGGAT GAGGCCGGGA CACCTGCGGC CCTGCGGCGC
GAGGTTCTGA CGGCCAAATC CCCCTCTGAT GTGTTGCGAT TGCTCCCGAG TGCGCTTCAG
GGAACTGAGC AGGAGACTGC CGCATGA
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| Protein sequence | MSFSVGPTHL DPPVALAPMA GITDRPFRDL VRSFGAGLVV SEMVASQEMV QAKPGVREKA
ELSADVENTS VQIAGRDAYW MAEAARQVAD RGARMIDINM GCPAKKVTNG YSGSALLKTP
DHALSLIEAV VQAVDVPVTL KTRLGWDDNC LNAADVARRA EAAGVQMVTI HGRTRCQFYK
GHADWAAISE IKNAISVPLL ANGDIVDAKS AGKALSDSGA DGVMIGRGVQ GRPWLLAQIA
HDLWGTAAPD VPEGRAFIDL VSKHYEAMLA FYGAELGLRV ARKHLGWYMD EAGTPAALRR
EVLTAKSPSD VLRLLPSALQ GTEQETAA
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