| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1276 |
|---|
| Symbol | |
|---|
| ID | 4077436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1374507 |
|---|
| End bp | 1375832 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006584 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_613271 |
|---|
| Protein GI | 99081117 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.521519 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA CGTTGAAACA TACGCTTCTG TTCGCCTTCG TCGGCCTGTT GCTGGTGCTC
GAGGGGACCA CAAATGCGTT TGGCGTTTTC TCGGGATCGT GGAACTCTGC GTTGACCATC
CTCAATATGG GGCTGATCTC GGCCATCATG GCGATTGGGG TCAATCTGCA GTGGGGGTTT
GCCGGGTTGT TCAACGTCGG CATCATGGGC TTTACCGCGC TTGGCGGGCT GGCCGTGGTT
TTGACCTCCA TGCCGCCCAC CCCCGGTGCC TGGCAGGCAG GTGGTTGGCA AATCCTGCTG
GCGCTGGTGC TGGGTGCGGC GACCATCGCA GCCGCAATCT ACAGCTATCG GGTGATGGCG
GCGGGCAAGG CGCGCACGCT GACCCTGCTT GCAATCCTGA TCGTGGGATT TGTGGTTTAC
CGCGCAGCGC TGGATCCCGG TGTTGAAGCC ATCGAGTCGA TCAACCCCGC GCTTGAGGGC
AACATTGGCG GCTTTGGCCT GCCCGTGCTC CTGGCCTGGC CGCTGGGCGG TCTGCTGGCG
GCGGGTGTTG CGTGGATGAT CGGCAAGACA GCGCTGGGGC TGCGGTCGGA CTATCTGGCG
ATCGCAACAC TTGGCATTGC CGAGATCATC ATTGCGGTGC TGAAGAACGA GGACTGGCTG
TCCCGAGGGG TCAAAAACGT CGTCGGCTTG CCGCGCCCCC TGCCCTATGA GGTTGATTTG
CAAGCAGATC CTGCGTTCGT GAACCAGGCT GCGGCTTGGG GCATGGATGC CACCACGGCC
TCCACGCTCT ACGTGAAACT GGGCTATGCG CTCATGTTCA CGGTCGTGCT GCTGGTCTTC
CTCTGGATGG CACAAATGGC GCTCAAGAGC CCCTGGGGGC GGATGATGCG CGCCATTCGG
GACAATGAAG TGGCCGCCAA CGCCATGGGC AAACATGTCA CCCGGCGCCA TCTGCAGGTC
TTCATCCTTG GTTCGGCCAT TTGCGGCGTG GCTGGTGCGA TGATGACGAC GCTCGACAGC
CAGTTGACAC CCGGCACCTA CAACCCGCTG CGGTTTACCT TCCTCATCTG GGTGATGGTG
ATCGTCGGAG GCTCCGGTAA CAACTTCGGC GCGGTGCTTG GCGGGCTCTT GGTGTGGTTC
CTGTGGATCA AGGTGGAGCC GATGGGCGTG ATGCTGATCG AGCTTGTGAC CTCTGGCATG
TCCGAGGACA GCGGACTGCG CGCACATCTT CTGGAGAGTG CCTCACATAT GCGCCTGTTC
ACCATGGGGC TGGTCTTGCT GCTGGTGCTC CGGTTTAGCC CAAGGGGTCT GATCCCGGAG
AAATAA
|
|---|
| Protein sequence | MSDTLKHTLL FAFVGLLLVL EGTTNAFGVF SGSWNSALTI LNMGLISAIM AIGVNLQWGF
AGLFNVGIMG FTALGGLAVV LTSMPPTPGA WQAGGWQILL ALVLGAATIA AAIYSYRVMA
AGKARTLTLL AILIVGFVVY RAALDPGVEA IESINPALEG NIGGFGLPVL LAWPLGGLLA
AGVAWMIGKT ALGLRSDYLA IATLGIAEII IAVLKNEDWL SRGVKNVVGL PRPLPYEVDL
QADPAFVNQA AAWGMDATTA STLYVKLGYA LMFTVVLLVF LWMAQMALKS PWGRMMRAIR
DNEVAANAMG KHVTRRHLQV FILGSAICGV AGAMMTTLDS QLTPGTYNPL RFTFLIWVMV
IVGGSGNNFG AVLGGLLVWF LWIKVEPMGV MLIELVTSGM SEDSGLRAHL LESASHMRLF
TMGLVLLLVL RFSPRGLIPE K
|
|---|
| |