| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1256 |
|---|
| Symbol | |
|---|
| ID | 4077650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 1353542 |
|---|
| End bp | 1354474 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638006564 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_613251 |
|---|
| Protein GI | 99081097 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.196796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATGACA AAAAATCATA CATGTCGGTA CCTCGCAGAT TTCTTCCTTC GATTGCGTCC
CTCCGCGCGC TGGAGGCGGT TGACCGCCTC GGGAGCGCTT CTGCGGCTGC GGTAGAGCTC
TCCTTGACGC AAGGGGCTGT GAGTCGCCAG TTGCAGGCGC TGGAGCGGCA GCTTGGCATT
GAGCTTGTCC TGCGCGATGG AAAGGCGCTC TCTTTGACGC CAGATGCGAC GGACTATGCC
CAGGAGGTAC GCCATGCGCT CGACCGGATT GCGCAGGCAA CCCTGCAGGT GCAATCCGTT
CCATTGGCCG GAAGCCTGAA CCTCGCCATT TTGCCCGCCT TTGGCATGCG CTGGCTGATG
CCTCGTTTGC CGGCGTTCTC ACGGCGACAT CCGGATGTGA CAATCAATAT GTCCACCCGG
TTGTCGCCTT TTAACTTTGC AACGCAAAGC TTTGATGCCG CACTTCATTT TGGACATGCA
GACTGGCCGG GGACGGATTC TCTGCTGCTC AAGCACGAGC AGCTTTTGCC GGTCTGTGCG
CCGGAGCTTG TCAAACGCGC CAAGGTTGAT GCACCGGGCG ATATCCTCGC CCTACCGCTT
TTGCATATTC AAACCCGGCC GACCGCTTGG GCGGATTGGT TTCAACGGCA GCAAGTTCCG
ACTTCGGGCA CGCTCGGTGG TAGCATGTAT GACCAGTTCT CGACCATCAA TCAGGCTGCG
CTGCATGGTT TGGGGGTGGC CTTGATGCCG GATTATCTCG TGGAACAGGA CCTCGCGACA
GGGCGGCTGG TGTCATTGCA TCCCGTGCCC GAAGACATTG GCGGCGCGTA TTATCTGGTC
TGGCCGACCA GCAAGTCTCG CCACAGCGGC CTTCAGAAAT TTCGTGACTG GCTAGCCGAA
CAGGCACAGC CCGAAGATCC CTTGCCGCGC TAA
|
|---|
| Protein sequence | MYDKKSYMSV PRRFLPSIAS LRALEAVDRL GSASAAAVEL SLTQGAVSRQ LQALERQLGI
ELVLRDGKAL SLTPDATDYA QEVRHALDRI AQATLQVQSV PLAGSLNLAI LPAFGMRWLM
PRLPAFSRRH PDVTINMSTR LSPFNFATQS FDAALHFGHA DWPGTDSLLL KHEQLLPVCA
PELVKRAKVD APGDILALPL LHIQTRPTAW ADWFQRQQVP TSGTLGGSMY DQFSTINQAA
LHGLGVALMP DYLVEQDLAT GRLVSLHPVP EDIGGAYYLV WPTSKSRHSG LQKFRDWLAE
QAQPEDPLPR
|
|---|
| |