| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1251 |
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| Symbol | |
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| ID | 4077645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1344583 |
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| End bp | 1347180 |
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| Gene Length | 2598 bp |
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| Protein Length | 865 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006559 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_613246 |
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| Protein GI | 99081092 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.249814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATA ACCAGAGCGC GACGGCTCAA GAAGACCGTT CGCTTGAGGA TTTTGTAGCC
GATAGCGACA CTGGCGGTCG CTTGCCGCAG GATGCGTTGG GACGTAATGC GCTGTGGTAT
CTACCACTTG TCTGGTCGCT GTATCAGCTT TGGATCGCCT CACCGCTGCC CTTTATCCTC
GGGGTTGGCG TGTGGAATGA CACCCAGACC CGGGCCATTC ACCTTGGTTT TGCGGTGCTT
CTGGCCTTCA TCGCGTTTCC CGGACTGAAA TCGAGCCCTA GACACCACAT TCCGATTCCA
ACCTGGATCA TTGGTGCCGT TGGTGCGCTC TGTGCCTCCT ATCTGTTTTA TGCCTACTCC
GGCGTCGCTG CGCGCTCTGG TGCGCCCAAC CAGACCGATG TGATCGTCTC CATCGTGGGG
CTGGTGCTGC TGCTGGAGGC CGCACGCCGC AGCCTTGGTT TCCCGTTGAT GGGTGTTGCG
CTGTTCTTCC TCGCCTATGT CTTTTTTGGC TCTTCGCCAT GGTTGCCGGA AGTGGTGCAA
TGGAAGGGCG CCTCGATCAA CAAAGCCATG AGCCATATGT GGCTAACCAC TGAGGGCGTT
TTTGGTGTCG CTCTGGGCGT ATCCTCGGGT TTTGTGTTTC TTTTTGTGCT CTTCGGCGCA
CTTCTTAATC AAGCCGGGGC AGGGAACTAC TTTCTGAAAC TGGCCTTTGC GGCCCTCGGG
CACCTGCGCG GCGGCCCCGC CAAAGCAGCT GTGATCGGCT CGGCCGCCAC CGGTCTTATT
TCGGGTTCGT CCATCGCCAA TGTGGTCACA ACCGGGACCT TCACCATTCC GCTGATGAAG
CGCGTGGGCT TTCCCGCCAC CAAGGCAGGC GCGATCGAAG TCTCTTCGTC AATCAACGGC
GTTCTGACGC CGCCCGTGAT GGGCGCGGTG GCCTTCCTGA TGACCGAGTA TGTCGGCATT
CCTTATGTGG AAGTGGTCAA AACTGCGATC ATCCCGGCAG CGATTTCCTA TATCGCGCTG
ATCTACATCG TGCACCTTGA AGCGCTGAAA ATGGGCATGA AGGGCTCGAG CCGGATGCAT
CCGGTCAAGT TCTTCCTCGG TGCAATCTTC ACCATCTCGA TCTCGATCCT GATCGGGGGC
GGCACCCTCT GGCTCTGCGG TGTTCTCGTG AACGCGCTGG AGAGCATTGC AGGTGGCGCA
ACCACATGGC TGATCGTCGT GATCATGGCG GTGCTCTATG TTCTGGCGCT GAAGGTGGCT
GCCGCACAAG AGGATCTGGA GATCAGCATC GAGTCGATGC AAAACCTGCC TCCCACGCGC
GAGATCTTTA AAACCGGCAT TCATTATATC ATGCCGATCC TGCTGCTGAT GTATCTTCTG
ATGATCGAAC GGAAATCGCC GGGGCTGTCG GCCTTCTGGT CGTCCGTCGC AATGCTTGTG
ATCCTCGCGA CGCAGAACCC GATCAAGGCG ATGTTCCGAG GTCAAGACAC TGCAATTGCT
GATTTCAAAC AAGGCATTGC GGACATCTTT GAAGGCCTGA TCATCGGTGC GCGCAACATG
ATTGGCCTGG CCTGCGCCAT GGGTGTTGCC GGGATCATCG TGGGCGCCGT GACCCTTACG
GGGATTGGGC AGGTGATGGC GGAATTCGTA GAATTCCTCT CGGGTGGCAG CGTCATGCTG
ATGCTGATAT TTGTCGCGCT CATCTCCATT GTTCTGGGCA TGGGTCTGCC AACAACCGCC
AACTATATCG TGGTGAGTTC GCTGATGGCC GGCGTTGTGG TCGAACTTGG CGCGCAAAAC
GGCCTGATCG TGCCGCTGGT TGCTGTCCAT ATGTTCGTCT TCTACTTCGG GATCATGGCG
GATGTGACGC CACCCGTGGG CCTTGCAAGC TTTGCAGCTG CGGCAATCTC CAAGGGTGAT
CCGCTGCGCA CCGGCTTTCA GGCGTTTTTC TACTCGATCC GCACCGCGCT GTTGCCGTTC
CTCTTTATCT TCAACACAGA TCTTCTGCTG ATTGATGTGG GACCGATCCA GGCCATCTTT
GTCTTTATCG TCGCGATGAT TGCGATGCTG CTGTTTGCGG CCTCGACAAT GAACTATTTC
ATCGTGAAAT CAAAGATTTG GGAAAGTGTC TTGTTGCTCC TGGTGGCCTT TACCTTGTTC
AGGCCCGGGT TCTTCCTCGA TCAGTTGCAA CCCGCCTTTG AAACCCGACC GGGCTCTGCG
GTCTACGAGA TGGCCGAAGC GGTCGAAGAT GGCGGAACGC TGCGTGTGCG TCTGGTGGGC
GAAAGCCTTG AAGGCGATAT GGTCGATGCC CGTTTCCTGT TGCCGCTTGG CGAAAAGGGC
GCGGATGGGC AGACCCGTCT CTATGATGGC GCTGGGATTG AGTTCCGCGA TGAGGATGGC
AAGATCTACG TCGACAACCT GAACTTTGGC GGTCCGGCAG AGCAGCTTGG CATCGATTTC
GACTGGGAAC TGGTCGAGAT GGAGGTTGAG GCTGATCGTC TGCCGAAAGA AGTCTTCTAT
CTGCCGGCGT TCTTGATCCT TGGTTTCGTG GTCTTCCTGC AAATGGGCCG GAAGCGCAAA
GAAGAAGGAG TAGCCTGA
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| Protein sequence | MTDNQSATAQ EDRSLEDFVA DSDTGGRLPQ DALGRNALWY LPLVWSLYQL WIASPLPFIL
GVGVWNDTQT RAIHLGFAVL LAFIAFPGLK SSPRHHIPIP TWIIGAVGAL CASYLFYAYS
GVAARSGAPN QTDVIVSIVG LVLLLEAARR SLGFPLMGVA LFFLAYVFFG SSPWLPEVVQ
WKGASINKAM SHMWLTTEGV FGVALGVSSG FVFLFVLFGA LLNQAGAGNY FLKLAFAALG
HLRGGPAKAA VIGSAATGLI SGSSIANVVT TGTFTIPLMK RVGFPATKAG AIEVSSSING
VLTPPVMGAV AFLMTEYVGI PYVEVVKTAI IPAAISYIAL IYIVHLEALK MGMKGSSRMH
PVKFFLGAIF TISISILIGG GTLWLCGVLV NALESIAGGA TTWLIVVIMA VLYVLALKVA
AAQEDLEISI ESMQNLPPTR EIFKTGIHYI MPILLLMYLL MIERKSPGLS AFWSSVAMLV
ILATQNPIKA MFRGQDTAIA DFKQGIADIF EGLIIGARNM IGLACAMGVA GIIVGAVTLT
GIGQVMAEFV EFLSGGSVML MLIFVALISI VLGMGLPTTA NYIVVSSLMA GVVVELGAQN
GLIVPLVAVH MFVFYFGIMA DVTPPVGLAS FAAAAISKGD PLRTGFQAFF YSIRTALLPF
LFIFNTDLLL IDVGPIQAIF VFIVAMIAML LFAASTMNYF IVKSKIWESV LLLLVAFTLF
RPGFFLDQLQ PAFETRPGSA VYEMAEAVED GGTLRVRLVG ESLEGDMVDA RFLLPLGEKG
ADGQTRLYDG AGIEFRDEDG KIYVDNLNFG GPAEQLGIDF DWELVEMEVE ADRLPKEVFY
LPAFLILGFV VFLQMGRKRK EEGVA
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