| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1035 |
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| Symbol | |
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| ID | 4078547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1114531 |
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| End bp | 1115472 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006339 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_613030 |
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| Protein GI | 99080876 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.186614 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGCAC AGACCGCACG CACGCGCGTT GATTTCTACC TCGGAGCCTG TTTGGCCGTG
GTCTGTGCTG GCATGGTGGT TCTGAATGTC TGTCGCGCGG ATTACATCCT TGCGGGCGCC
ATTGCCGCTT TGCTGCTGAG TGTTGGCGCT GATCTTCAGG CTGCGTATCG CGGCAGAACG
CTGCCGATTC CCATCCCGGC GATCCTGATC GGGCTTGGCG CCGTGATTCT GTTCTCGGTC
TGGCGTCTGG GGCCACAGCT TGGGTTCTAT GTCTTTCCCA CATTGATTGG CGGCTATCTG
GCCATGCCCG GACGCGGCGC CCTGTGGTAT TCCATCACGC TGATCGCGGG CGTGACCGCA
GTTCTTGTGG CGATAGGCGC CGACACCGCG TTGGTGCTGC GGTTGGGGTT TGCCCTGCTG
ATCTGCGTCG TTTTCCTGAG CTATGCCGCC AAACGCATTG TCGAAGCGCG CGATTCTCTT
GAGGACAGCG CCTTTCTGGA TCCGCTCACC GGCTGCTTCA ATCGCCGCCA TCTTGCACGG
GTGGCGCAGA GCCAGGACCT GAGCAAAGCC GCCCTTATCT TGTTCGACCT TGATTACTTC
AAAAGCGTCA ACGACACCTA TGGCCACCCC ACCGGGGACT TTGTGCTGCG GGCTGTCACC
TCGCTTGTGC GCCAGTTCCT TGGCCCGGAG GATCTGTTTT TCCGCATCGG TGGCGAAGAG
TTCATGGTGT TGCGCCTGCG TTCGGAGGAG GGCAGTACGC GCGCCCTCGC GGAGAAATGT
CGTGCGGCGC TTGATGACTC GCAGATCCTG TCGTCCCGGC GTGTCACGGC CACCTTCAGC
TGCGCAGAGT TCGACGGGCG CACCGAGATC GAACCGGTAT TGGGGCAAGC CGATGTGGCG
CTGCTGCAGG CCAAAAGGGC AGGCCGCAAC CGGGTCGTCT GA
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| Protein sequence | MAAQTARTRV DFYLGACLAV VCAGMVVLNV CRADYILAGA IAALLLSVGA DLQAAYRGRT
LPIPIPAILI GLGAVILFSV WRLGPQLGFY VFPTLIGGYL AMPGRGALWY SITLIAGVTA
VLVAIGADTA LVLRLGFALL ICVVFLSYAA KRIVEARDSL EDSAFLDPLT GCFNRRHLAR
VAQSQDLSKA ALILFDLDYF KSVNDTYGHP TGDFVLRAVT SLVRQFLGPE DLFFRIGGEE
FMVLRLRSEE GSTRALAEKC RAALDDSQIL SSRRVTATFS CAEFDGRTEI EPVLGQADVA
LLQAKRAGRN RVV
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