| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0887 |
|---|
| Symbol | |
|---|
| ID | 4075984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 948037 |
|---|
| End bp | 949254 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638006189 |
|---|
| Product | SAM-dependent methyltransferase |
|---|
| Protein accession | YP_612882 |
|---|
| Protein GI | 99080728 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1092] Predicted SAM-dependent methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.324188 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.483591 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG CTTCCCTGAC CCCGCCCGCG CGCCCGCGCG TCAAAATGAA ACCCAAGTCA
AATGCCCGTG CGATCCGCCA CGGCTTTCCT TGGGTCTATG CCAACGAACT GGTCACTGAC
CGGCGCACCA AGAAGCTCGC GCCCGGCAGC CTCGCGGTGC TCGAGGATGA AGCAGGCCGC
AGCCTCGGCC TCGTGGCCGT CAATCCCGAG AGCAAGATCA TTGCCCGGAT GCTCGATCGC
AACCCGGAAG CCTTGATTGA TGCAGAGTGG TTTGCCGCGC GCCTGTCGCG CGCCGCAGCT
CTGCGTGGCC AGCTTTATGA CGCGCCTTTC TACCGACTGG TCCATGCCGA GGCCGACGGG
CTGCCGGGCG TGGTGATTGA CCGCTTTGGC GAGGCCTGCG TTGTGCAGCC CAATGCCGCC
TGGGCAGAGG CCCATCTTGA GGCGCTGACA CAGGCGCTGG GCGAGGTGAC GGGCTGCACG
GTGATCCTGA AGAACGCATC GGGCCGCACC CGTGGGCTTG AGGGGCTTGA TGATGAAAAC
GCGGTGCTCA AAGGTGCCGC ACCCGAGGAG CCGGTCCCGG TGGTGATGAA TGGTGCCACC
TATATGGCGG ATCTCACCGG CGGGCAGAAG ACCGGCCTGT TTTACGATCA GCGTGACAAC
CATGCCTTTG CCGCACGTCT GGTAGCGCCG GGGGCCGAAG TCCTCGATGT GTTCTCGCAT
GTGGGCGGCT TTGGCCTCGC GATGCTGGCG GCGGGCGCGG GGCAGGCGAC TTGTGTCGAT
GGCTCTGCGG CAGCCCTTGA TCTTGCGGCA GCGGGCGCTG CGGCCTCCGG CCACGGCGAC
AGGTTTACCG CCCGTCAAGG CGATGCCTTT GACGTGCTGG CAGCGCTTGG TGCAGAAGGC
GCAAAGTTTG ACGTGGTGAT CTGTGACCCG CCCGCATTTG CGCCCTCAAA ACAAGCGCTT
GAGGCTGGTT TGCGCGCCTA TGAGAGGGTC GCGAAACTGG CCGCGCCCCT GGTAAAGCCC
GGCGGCTACC TAGGCTTGTG TTCTTGTTCG CATGCTGCGG ATCTGACGCG CTTTCGCAAT
GCGTCTGCAC GCGGGATCGG CAAGGGCGGA CGTCGCGGAC AGCTCTTGCA CACCGGCTAT
GCGGGGGCGG ACCATCCGCA GATGCCGCAG CTGGCCGAGA GCGGCTATCT CAAGGCCGTG
TTCTTCCGGC TCGACTGA
|
|---|
| Protein sequence | MTDASLTPPA RPRVKMKPKS NARAIRHGFP WVYANELVTD RRTKKLAPGS LAVLEDEAGR
SLGLVAVNPE SKIIARMLDR NPEALIDAEW FAARLSRAAA LRGQLYDAPF YRLVHAEADG
LPGVVIDRFG EACVVQPNAA WAEAHLEALT QALGEVTGCT VILKNASGRT RGLEGLDDEN
AVLKGAAPEE PVPVVMNGAT YMADLTGGQK TGLFYDQRDN HAFAARLVAP GAEVLDVFSH
VGGFGLAMLA AGAGQATCVD GSAAALDLAA AGAAASGHGD RFTARQGDAF DVLAALGAEG
AKFDVVICDP PAFAPSKQAL EAGLRAYERV AKLAAPLVKP GGYLGLCSCS HAADLTRFRN
ASARGIGKGG RRGQLLHTGY AGADHPQMPQ LAESGYLKAV FFRLD
|
|---|
| |