| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0879 |
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| Symbol | |
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| ID | 4076249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 937960 |
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| End bp | 938907 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006181 |
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| Product | TRAP-type mannitol/chloroaromatic compound transport system small permease component-like |
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| Protein accession | YP_612874 |
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| Protein GI | 99080720 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.214091 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGACG ACATGAGTAT TTCCTTTTTT GGCGCGATTG GTGGCTTCCT TTGGTGGCTC
GCCTCAAACG TATTTGGCGC CTTTTATAAC ATCGGCTATG CCGTCACCCA TCCCGAGCTG
TGGCTCGACT GGCTGACATG GGCCGGCACA CCAGAGGACA AGGCATCGGT GATGCGCTTT
GTCTACTATG GTGGTTCGGT CGAGTTCTTC TTTGTGGTCT TCACCACACT CCTCGTCCTC
ACGGGGCTCG GCATCTATTA CCGTGGCTTC ATGTGGGGGA TGGTGCGCGG GCTTGAGGGC
TTTGCCAACA CCTTGGGGCG CTTCTTTGCC TGGGCCGGTC TCTTGATGGT CCTGCAGCAG
ATCATCATCG TGTTCATGCA GCGCGTCTTT GCCCGCCCCG ATATGAGTTT CGGGCTCGGC
ATCGCGCTGG AAAAGGACAT CTCGTGGTTC GCAGAAGAGC TGAAGCTCTA TAACGCGCTC
GTGGTGTGTT TCTGTGTCAC CTACACCTTT GTGCAGGGCG GCCATGTGCG CGTTGACCTG
ATCTATGCGG GCATCTCGCA TCGCGCCAAA CGCGTGGTCG ACATGGTTGG GTCGCTGATC
TTCATGATGC CCATGGCGGT GATCACCTGG ATGTACGGAT GGTACTTCCT GTGGCGTCAC
CTGATCGTGC CAAAACCCTC CGCCTCCGAC CAACTGGATC GTCTGGTCAT GAAAGCGCGC
GCCTTGCGCT GGAACGTGGA GACCATCGGC TTCTCGCCCA ACGGCTTTAA CGGCTATTTC
CTCTTCAAGA TCCTGCTGGT CGCATTTGCG GGCCTCGTGT TCCTGCATGC GGTGGCGTTC
TTCTACCGCT CTCTCCTCGA ATATATCGAA GGCGAAGAGT CGGAAGGGAA ATACCTCGAC
AAAGATACGC TTGGCGAAGG CGAAGAAGCC TATGAAGGCG CTCATTAA
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| Protein sequence | MQDDMSISFF GAIGGFLWWL ASNVFGAFYN IGYAVTHPEL WLDWLTWAGT PEDKASVMRF
VYYGGSVEFF FVVFTTLLVL TGLGIYYRGF MWGMVRGLEG FANTLGRFFA WAGLLMVLQQ
IIIVFMQRVF ARPDMSFGLG IALEKDISWF AEELKLYNAL VVCFCVTYTF VQGGHVRVDL
IYAGISHRAK RVVDMVGSLI FMMPMAVITW MYGWYFLWRH LIVPKPSASD QLDRLVMKAR
ALRWNVETIG FSPNGFNGYF LFKILLVAFA GLVFLHAVAF FYRSLLEYIE GEESEGKYLD
KDTLGEGEEA YEGAH
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