| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0875 |
|---|
| Symbol | |
|---|
| ID | 4076245 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 931943 |
|---|
| End bp | 933694 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006177 |
|---|
| Product | acetolactate synthase 3 catalytic subunit |
|---|
| Protein accession | YP_612870 |
|---|
| Protein GI | 99080716 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.840064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.16884 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTG AAATGACCGG CGCAAAAATG GTTGTCCAAG CCCTCAAGGA GCAGGGCGTG
GACACGGTAT TCGGATATCC CGGAGGCGCT GTCCTACCCA TTTACGATGA AATCTTTCAG
CAAAATGACA TTCGCCATAT TCTGGTCCGT CACGAGCAGG GCGCAGTGCA TGCCGCCGAA
GGGTATGCGC GCTCGACCGG CAAACCCGGC GTGGTGCTTG TGACCTCTGG CCCCGGTGCC
ACCAACGCGG TGACCGGCCT CACGGATGCG CTGCTGGACT CGATCCCGCT GGTGGTTCTC
ACCGGGCAGG TCCCGACCTT CATGATCGGC TCTGACGCCT TTCAGGAGGC CGACACCGTC
GGCATCACCC GCCCCTGCAC CAAGCACAAC TGGCTGGTGA AGGACACCGA TAAACTCGCC
TCCACCATCC ACGAAGGGTT CCATGTCGCA ACCTCTGGCC GCCCTGGCCC GGTGCTGATC
GACATTCCCA AGGACGTGCA GTTTGCCACC GGCACCTATG AGCCCAAGAA ACCCTCGGCT
TCGCATTACC AGCCGGTCGT CAAGGGCGAC ATGGAAGAAA TCACCGAGCT GGTCGCCGCG
ATGGAGACCG CCAAACGCCC GGTGTTTTAT ACCGGCGGCG GCGTGATCAA CTCGGGCCCG
GCCGCAAGCC AGCTTCTGCG CGAACTGGTG GAGGCCACCG GCTTTCCGAT CACCTCGACC
CTGATGGGTC TCGGTGCCTA TCCCGCGTCG GGCAAGCAGT GGCTTGGGAT GCTTGGCATG
CATGGTCTCT ACGAGGCCAA TATGGCGATG CATGACTGCG ACCTGATGAT CAACATCGGC
GCGCGCTTTG ATGACCGGAT CACCGGTCGC ATCGACGCCT TCAGCCCGAA ATCCATCAAG
GCCCATATCG ACATCGACCC CTCCTCGATC AACAAGGTGA TCAAGGCGGA CATCCCGATT
GTCGGGGACG TTGGCCATGT GCTTGAGGAC ATTCTCAAGG TCTGGAAGAG CCGCGGGCGC
AAGACCAACG CCGAAGCACT GGCAAAATGG CAGGGCCAGA TCGACGAATG GCGCGCGGTG
AAATGCCTGA CCTATGAGAT GTCCGAAACC ACCATCAAGC CGCAATATGC GCTTGAGCGT
CTCGAGGCGC TGACCAAGGG TCGGGATCGC TATATCACCA CCGAAGTGGG CCAGCACCAG
ATGTGGGCAG CACAGTTCCT GGGCTTTGAA GACCCCAACC GCTGGATGAC CTCCGGGGGG
CTTGGCACCA TGGGCTATGG TACGCCTGCC TCTATCGGCG CGCAGATCGC GCATCCCGAT
GCGCTGGTGA TCAACGTCGC GGGCGAGGCC TCTTGGCTGA TGAACATGCA GGAAATGGGC
ACTGCGACCC AGTACCGCCT GCCAGTGAAA CAGTTCATCC TCAACAACGA ACGCCTTGGC
ATGGTGCGCC AGTGGCAGGA GCTCTTGCAT GGTGAGCGCT ACTCGCACAG CTGGTCCGAA
GCGCTGCCCG ATTTTGTCAA ACTCGCCGAA GCCTTTGGCG CCAAGGGCAT CATCTGCTCG
GACCCCAAGG ATCTGGATGA CGCGATCATG GAGATGATCG AATATGACGG GCCGGTGATC
TTTGACTGTC TGGTGGAAAA GCACGAGAAC TGCTTCCCGA TGATCCCCTC GGGCAAGGCT
CACAACGAGA TGCTGTTGGG CGCGGCTGAA ACGCAGGGCG TGATCCAGTC CGGCGGCGCG
GTTCTGGTCT GA
|
|---|
| Protein sequence | MTREMTGAKM VVQALKEQGV DTVFGYPGGA VLPIYDEIFQ QNDIRHILVR HEQGAVHAAE
GYARSTGKPG VVLVTSGPGA TNAVTGLTDA LLDSIPLVVL TGQVPTFMIG SDAFQEADTV
GITRPCTKHN WLVKDTDKLA STIHEGFHVA TSGRPGPVLI DIPKDVQFAT GTYEPKKPSA
SHYQPVVKGD MEEITELVAA METAKRPVFY TGGGVINSGP AASQLLRELV EATGFPITST
LMGLGAYPAS GKQWLGMLGM HGLYEANMAM HDCDLMINIG ARFDDRITGR IDAFSPKSIK
AHIDIDPSSI NKVIKADIPI VGDVGHVLED ILKVWKSRGR KTNAEALAKW QGQIDEWRAV
KCLTYEMSET TIKPQYALER LEALTKGRDR YITTEVGQHQ MWAAQFLGFE DPNRWMTSGG
LGTMGYGTPA SIGAQIAHPD ALVINVAGEA SWLMNMQEMG TATQYRLPVK QFILNNERLG
MVRQWQELLH GERYSHSWSE ALPDFVKLAE AFGAKGIICS DPKDLDDAIM EMIEYDGPVI
FDCLVEKHEN CFPMIPSGKA HNEMLLGAAE TQGVIQSGGA VLV
|
|---|
| |