| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0854 |
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| Symbol | |
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| ID | 4076029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 906573 |
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| End bp | 907493 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006152 |
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| Product | haloacid dehalogenase-like hydrolase |
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| Protein accession | YP_612849 |
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| Protein GI | 99080695 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0647] Predicted sugar phosphatases of the HAD superfamily |
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| TIGRFAM ID | [TIGR01459] HAD-superfamily class IIA hydrolase, TIGR01459
[TIGR01460] Haloacid Dehalogenase Superfamily Class (subfamily) IIA |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.770562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGGCC AAAGTACAGA TATCGGCACT GACTGGGCGT TTCAGCGCTA TGAGAGCGTG
CGTGCAACCC TGCCCGAGGC CAGTTTTGCG GCGGCCTCAC GGCGGGGAGG AGATCTTGGC
GACACCGTCG GAGATTTTGA CGCCTATATC CTCGATGCCT TTGGGGTTTT GAACCGGGGC
GAGACCGCAA TTGCGGGCGC GGTGGAGCGC ATGGCAGCAC TCAGGGCGCT TGGTAAAAGG
CTGGTGGTGC TGACCAATGC GGCAAGCTAC ACGCGCGCAG AGGTGCTGGC GAAATATCAC
CGGCTTGGCT TTGACTTCGA CGCGTCAGAA GTGGTCTCAA GCCGCGATGT GGCCTTTGCC
GGTCTGCCCG CACTCCCGGC CGGCGCATTT TGGGCCGCCG CTGCCGCAGC AGGTGATGAT
TTCAGTGATG CCCCCAGCGG CGCTGAAATC GCGCATCTGG CAGAGCGGCC GGAGCTCTTG
CAAAGCGCGG GTGGCTTTCT GCTGCTGTCC TCTGCACGCT GGAGCGCGGC CGAAACAGAC
GCGCTCACCG AGGCATTGTT GGCGTCTCCG CGTCCTCTGG TGGTCGCAAA CCCCGATCTC
GTCGCCCCGC GCGAGGATGG CCTTTCGATG GAGCCGGGCC TGATCGCGCA GGAGCTGACC
GAGCGCACCG GTCAGCCTGC AGCGTTTTTT GGCAAACCCT TTGGCAACGC CTTTGACGCG
GCACTCGCGC GGCTCTCTGG CATTGAGCGC ACGCGTATTG CAATGGTCGG CGATACGCTG
CACACGGATG TTCTGGGAGG CGCGGCTGCA GGGATCGGCT CCATCCTGAT CACCGATCAC
GGCCTTTTTA AGGGCCATGA TGTCGCGCCA TACATCGAAA AGAGCGCAAT TCGACCGAGT
TGGATCGTCT CGACAACATA A
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| Protein sequence | MAGQSTDIGT DWAFQRYESV RATLPEASFA AASRRGGDLG DTVGDFDAYI LDAFGVLNRG
ETAIAGAVER MAALRALGKR LVVLTNAASY TRAEVLAKYH RLGFDFDASE VVSSRDVAFA
GLPALPAGAF WAAAAAAGDD FSDAPSGAEI AHLAERPELL QSAGGFLLLS SARWSAAETD
ALTEALLASP RPLVVANPDL VAPREDGLSM EPGLIAQELT ERTGQPAAFF GKPFGNAFDA
ALARLSGIER TRIAMVGDTL HTDVLGGAAA GIGSILITDH GLFKGHDVAP YIEKSAIRPS
WIVSTT
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