| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0842 |
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| Symbol | |
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| ID | 4076017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 888359 |
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| End bp | 889966 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006140 |
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| Product | peptidase C1A, papain |
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| Protein accession | YP_612837 |
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| Protein GI | 99080683 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4870] Cysteine protease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.503051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCAAAGT CCGCACCGCT TGCGCGGGGC GATTATCTGA GCGCCCCACC TCAGCTGTCG
CTCAAACGAT TTGTACCCCC GGTGGGCGAT CAGGGCCAGC AGGGCAGCTG TGTGGGCTGG
GCCACCGCTT ATGCGGCGCG CACCTTGCTC AAGGCCAAGG ATCTCGAGGT TGAGAACACT
GATCGGCTGC GCGACCTGGT GCTGTCGCCG TCTTATGTGT TCAACCAGAT CCACCAGCCT
GGCTGCAACG GGTCTTATGT CGCAGAGGCG TTGACGCTGA TGCAGCGGCA GGGCGTGTCG
CTCTTGCGCG ACTTTCCCTA TGATCAATAT TCCTGCACGG CACAGCCTTC GGCGAGCCTG
CGCGACAAAG CGAGCCAGTT CCGGATCAAA GGCTATTCAC GCCTCTGGGG GGGCTATGGC
CGCAACAAGC ACGTCGCAAC CCGGCGCGCG CTGGCCAATG GCAATCCGGT TGTGATCGTC
ATGGGGGTGG GCGACGGGTT CATGCGCCAC AGCGGCAGTG GCATCTGGGA GCCAACCTCT
ACTGAATGGA GTGAGCTGCG CAGCAACACG CTGGGGGCGC ATGCGATGAC CGTGGTGGGG
TATGATGACA CCCGCGGTGG CGGCGCTTTC GAAGTGGTCA ATTCCTGGAG TGCGGGATGG
GGCAACCGCG GCTATTTCTG GATTTCATAC GAGGATTTCA ACGCTTTCGT CTATGAGGGC
TATGAGGTGC TGCCGCCCGA TCCACCTCCG CCGCCTCGGG TGGTCGATAT GGCGGGCAGC
GCACGGGTGC TGCATCTCTC GGGCAATGAG CTGGACGTGA CGCGCAGCGA AGGCGGTTAC
AAAATCCGCA AACCCCTGCC ATCGGGCACG CGCTTTCGGG TCGAGGCCTC AAGCAAATTC
AACGGCGCAC TATATGTGAT CGGGGGCGAT TCCAGCGGCG ACTATGTGAG CCTGTTTCCC
CGCGGCGACC GGGTGACGCC CTATACCCAT GGCGGAACCA CGATGCTGTT GCCGGGGCCG
ACAGAGCAGC ATTTCACCCG GCTCAATGAC ACGGTTGGAA CCGATTACTA TGTCTTGCTT
TACGCGCAGG AGCCGCTCGA TCCGGAAACC ATTGCGATGC GTATGGCGCG CGGATCCGGC
AGCGTGGAGG CACGGCTGCG CAGTGCGCTT GGCAACCGTC TCGTGCCACA AGATGAGATG
GAGTTGCTCG CGTCAGGCAT CGGTTTCGAA GCCGCAAGTG GAGAGGCGGA TGTGGCGGCT
CTGGTCCTGA GCATCGACCA CATTGCCCCG GATCCCGCGC AAGCCGATCG CGAGGCGCCA
CTGATTGTGC TCACCAACCC GGCGCCCGAG GCCTTTGACA GCGCGGATGC GGTGATCCCC
GTGCAAAGCC GTCTTTTCCG CCTCGAGGGC ATGGCGCAGG ATGAAAGCGA GATTGCTTCG
CTGCGTGTCA ACGGATCTCT GAGCAGCCGC TATTCCTCGC GCGGACCGTT TCGCGCCGAG
ATCGAGCTCC CCGAAGGGCC CGGTCCCCAT TCCATCGAAA TTGAAACACG CGACGCAGCG
GGCAATGCCG CGCGCCGGAG TTTTCAATTC AGCCTGACTT TCAACTGA
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| Protein sequence | MPKSAPLARG DYLSAPPQLS LKRFVPPVGD QGQQGSCVGW ATAYAARTLL KAKDLEVENT
DRLRDLVLSP SYVFNQIHQP GCNGSYVAEA LTLMQRQGVS LLRDFPYDQY SCTAQPSASL
RDKASQFRIK GYSRLWGGYG RNKHVATRRA LANGNPVVIV MGVGDGFMRH SGSGIWEPTS
TEWSELRSNT LGAHAMTVVG YDDTRGGGAF EVVNSWSAGW GNRGYFWISY EDFNAFVYEG
YEVLPPDPPP PPRVVDMAGS ARVLHLSGNE LDVTRSEGGY KIRKPLPSGT RFRVEASSKF
NGALYVIGGD SSGDYVSLFP RGDRVTPYTH GGTTMLLPGP TEQHFTRLND TVGTDYYVLL
YAQEPLDPET IAMRMARGSG SVEARLRSAL GNRLVPQDEM ELLASGIGFE AASGEADVAA
LVLSIDHIAP DPAQADREAP LIVLTNPAPE AFDSADAVIP VQSRLFRLEG MAQDESEIAS
LRVNGSLSSR YSSRGPFRAE IELPEGPGPH SIEIETRDAA GNAARRSFQF SLTFN
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