| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0819 |
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| Symbol | |
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| ID | 4076208 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 859581 |
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| End bp | 863936 |
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| Gene Length | 4356 bp |
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| Protein Length | 1451 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006117 |
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| Product | tape measure domain-containing protein |
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| Protein accession | YP_612814 |
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| Protein GI | 99080660 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5412] Phage-related protein |
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| TIGRFAM ID | [TIGR02675] tape measure domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.060992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0141632 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACT TTGCACGTCT CGGCATTGCT GTCGATAGCC AACCAGTGGT TCGCGCCCGC
GATGAGCTGG GCCGGTTTGT GCGCGCGGGT AGGACTGCTT CGGAGGCGGC AGACCGTCTT
GAGCACTCCA CCGGCCGTGC GCGCGATGAG TTCGGACGCT TCGTCAAGGG CGGCAACGCA
GCCGCTGGCG CTGCCACAGG CCTCTCGGCT GCTTTACGGA AAACCGTAAT CCAGATGGGG
GCCGTTGTCG GGATCGCGCA GAGTGCTCGC GCAGTTGGCG GCGCAGCTGA GAGCTACACA
AAGATGACCA ACAGCCTTCG AGCAATGGGC ATTGAGGCAG GACAGGCTGC TGGTGTGTTG
CAGTCAATTG CAGATGTTGC CAACCGGACC CGCGCGCCGT TGGATGCAAC AGCCCAGCTG
TATCAGAGGA TCAGCATTGC CGGTAGAGAC CTCGGTGCGT CACAAGCAGA GGTACTGCGT
TTCACGGAGA ATGTCGGACT TGCTCTTGCG CAGACAGGCA CGTCTTCGCA GGAAGCATCC
GGTGCACTGC TCCAACTCTC TCAAGCCATG GCTGGAGGAA CGGTTCGCGC GGAGGAATTC
AACAGCATTC TGGAAGGCGC GTTCCCGATC GCACAGGCGG CGGCCAATGC CATTGACGGC
GCAGCCGGTT CGGTAGGAAA GCTGCGCCAG ATGGTCGTTG AAGGTGAGAT TTCCAGCCGG
GAATTCTTCG AAGCGATCCT TAGCCAGACT GACGCACTCG AAGCGGCCTT CGAGCAGACA
GTTCCGACAA TCTCGCAAGC GTTTGGCGTC TTGGGGAACA ATTTCACCAT GTTCATCGGA
CAGATGGATG CTGCGACGGG CGCATCCGGT GTTGTCGCAG AGGCCATCCT TATGGTGGCC
GATAACCTGA ACACTGTTGC TGGCATTGCT GTTTCTGCAG GAGTAGCAGT GGCGACCGCT
TATGCTCCCG CCATCTGGGG GGCGGTCAAA GCTACAGGCG CTTGGGTGGC ATCGCTGGTC
ACACTTCGGG GGGCCTTGCT CGCGACCGGT GTCGGTGCGC TCGTGGTGGG AGCTGGCGTG
CTGATTGGAA AATTCCTCGA CCTTGTGCGG GCGACAGGAG GCTGGGGCAA CGCGCTCGAG
ATTCTAGGCG ATGTGGCTTC CGGCGTCTGG GATGGCATCA AGACCAGCGC GAGCGCTATT
GTTCCGGCGC TTGGGGCGCT ATGGGCTGAC ATGCACGCCC GCTTTGTCCG CGTGCTGCAA
GACATGTCTC TAGCTTGGGG AAACTTCCTC TGGAGCTTGG GCGCCCGCCT AGATGGTGTG
CCGTTCTTCG AGAGCGTGGC GCAGGGGCTA AAGAACGCCT CCGACAGCGC GATTGACAGC
ATGATCGAGC TTGATGCGAA GGCGAGCGGC CTCGAGGGAA CTGCGATCCG GCTTCGAAAA
GAGGCGTCAG GCCTTGTGTC TGAGGGCTTC GATAAAGCGG CGGAGGCGGC AGGCAAGCTG
CGCGCTCAGC TCGAGGGCAC TGCGGGCGCC ACCGACACGG GCGCGGACGC GGCCGGCGAG
TTGAACGACG CACTTCGCGA GCTCGAAAAG GGTGGCGCGA AGGCAGGGAG GGGGCTCGAA
CGAGTCAAGT CCGAGGCCGA GGCCTTTGCT GAGGCTATGG AAGACGCAGC CTTTACCACC
GAAGACTTCG GGAAGGATAA GGCCGGAATA CTCATCGGCG GTATCGACGG GATTTCCGGC
GCCTGGGGTG ATTTCGTCTC GCGCGGCTTT TCCGACTTCA AGGGCTTTGT CAAAAACGTC
CTGAGCAGCT TCGCGGGCAT GCTATCGCAG ATGATTGCTA TGTCGGCGAG AAACCGCATC
ATGATCGGTC TTGGATTTGG TGGTGTTTCA GGCGGGGTTG CTCAGGCCGC AGCCGAGGGC
GGTAGTGGCC TGCTTGGCAA CGTCCTCGGT TTGGGCAGTG GTGGTGCATT TAGCGGTGCA
GTGAGTGGAA TTTCCTCGGG CCTTGGCGGC GTGCTTTCAG GTGGTGGCCT TGGGTCCAGT
TTTGCGAACC TTGGTGGTCT GGTGACCGGT TCTGTGGGCG GCTGGGGCGC AGTGGGCGCG
GCGCTGCCCG CTCTGGGCGC TGTCGCCGCA GCGGTGAGCT TCTTCACCAC CAAAACCAAG
CACCTGGATA ACGGCCTTCG CGTGACCGCC GATAATATGG GCACCTTGGT TGAAGAGTTC
GACAAGGTGC AGAAGTCCCG CTTCTGGGGG CTCTCCAAAA AGGTCAGCCT CACCTTTGAG
GAGGCCGATG AGGCTACGGC TGCGCCCATC CGCAAGTCCA TTGAAGACAT CACCACCTCA
ATTGGCGCTG CCGGTGCGCG GCTTGGTCTC ACTGCTGATA ATTTCTCAAG CTGGTCCACG
CAGATCCAGG TAAGCCTCAA GGGGCTGGAT GAGGCGGCGC GGAATGCTGA GATCCAGCGC
ATCTTCGATA CCGTCGCCGA TCAGTTCTCC TACGCGGCGT TGGGGTCGTT CAATGAGGCC
ATGGGTGGCA GGCTGATCCG CGAAGGCGAG GACGCCGCGG CCACGCTGGA TGCGCTTGTG
TCCTCGATCA CCTCGGCCAA TCAGGCCATG GATCTGCTAA ATGGGGCGAT GTTTGAGACT
TCGGTCTACG GCGCAGATAT GGCGCGGCAA CTGATCGATG CAGCGGGTGG CCTTGATACC
TTCAATGCTT CTGTGAACAG CTACTTCACC AGCTTCTATA GCCAAGAAGA GCAGCTGGCG
TCGCGCACAG GCTTGTTGGC AGATCAATTC GAGGCCTTGA ATGTCGCCAT GCCGGCCACC
AAAGAGGCCT TCCGCGATCT GGTCGAGGCG CAGGATCTCA GCACAGAAGA GGGCAGGGCG
CTATATGCTG GTTTGCTTAA TCTGTCCGGT GAGTTCGCCA ATCTGAGCCA GCTTTCGGAA
GAGCTGTACG GCTCTGCTTC GCTTGCTGCC AGCGGCATCT CTGCGCTGGT GCGCTCCTTC
TCCAGTGACG TCTTGGGGGC GGAGGATGAA CTCGCTGATG CGCAGGCCAC AGCACTGGTC
GAGTACAACA ACGTGATGCG GATCATGGAT CTGCAGATCC GATCGGCACA AAGCGCGCGT
GACTCGATCA AAGGCATCTT CGATATCCTC TCGGACGGGC TGGACGCCCG CACACCGCTT
GAGCTTGAGG CGCAGCGCCT GCAGCGCGAA CGGCTGAAGG CGGAGCTTTC TGCCGGGATC
GATGACCCAC AGCGGCTGAG AGAGGTCGTG CAGGGCTTGA ACGCGCCCGC AGAGCAGTTC
TTCAGCACAT ACGCGGACTT CGCCTATGAT TACGCCAGAA CAAGCGCCCT CATGGATGAG
CAGAAGGGCA TCGCAGAGGA ACAGCTTACA GAGGCAGAGC AGCAACTCCG GGCACTGGAA
AACCAGAAGC GGGCGGTCGA GGAACTCTAT GGGCCACTGC TCGGGATCGA CCAGAACACC
GACAACCTGG AAGAGGCCAT GGAGCGCTTG GAGACTGCCA TGCTTGGCGT CGAGGCGGCC
ATGCTGCGTG TTGAGGACTC GATGTATGCG CTTGCTCAGG CCCTGCTTTC TGCAGTCTCG
GGCATAGGGG GTACGGGCGG ACTGATGGGG ATGGGCCGGG ACGCCTTCGA CCAGTTCAGC
TTTGACCGCA CCAATGGCAT TCTGAGTGAC CAAGGCGCGG GCGTTCTTGA CGGCGTTGCC
GCGCAAATCA ACGGCCTTTA CCAAGACGTC TTTGGCCGAA ATGTAGATGT GGCTGGCTTG
GACTTCTACG GCGACCTTCT GCAATCCGGA CAGGTCAAGG CGGGCCGCAT CCAGTACGAT
CTGATGACCT CGGGCGAGGC CCAGACGGGG GTGACACCGG GCTTTGGCAA CATCGGCTCT
GCAGCGCAGC CTGTTGATCC GGTTGAGGCA CTGTATGGCT CGATGCTGGG CCGTGCGGCA
GATCCAGCGG GTGTCGAATT CTGGAAGTCT ACGGGCCTGC AGGGCGAGGC GTTGATAAGC
GCCTTCCGAG ATGGGGCGCT GGCCGCTGGA GACACTCCCA GCTTTGATGG TGGTGGTTAC
ACCGGCAGCG GGCCGCGTGT TGGCGGCCTT GATGGAAAGG GCGGCTTCCT CGCAATGCTG
CATCCTCGTG AGACAGTTAT CGATCACACG CGCGCCAACC GTTCGGGCGG CCAAGCCGAG
GTGGATAGCA GCGCAGTGGT TCAGGAATTG CGCAAAATCG GTGATCGGCT GGCAGTTCTG
GAGTCCCATG CGCGCGCAAC GACTTACAAC ACAGGCAAGT CGATGCGGAC GCACACCAAA
TGGGACAGAG ATGGTGTGCC GAAGGAGCGG ACTTAA
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| Protein sequence | MTDFARLGIA VDSQPVVRAR DELGRFVRAG RTASEAADRL EHSTGRARDE FGRFVKGGNA
AAGAATGLSA ALRKTVIQMG AVVGIAQSAR AVGGAAESYT KMTNSLRAMG IEAGQAAGVL
QSIADVANRT RAPLDATAQL YQRISIAGRD LGASQAEVLR FTENVGLALA QTGTSSQEAS
GALLQLSQAM AGGTVRAEEF NSILEGAFPI AQAAANAIDG AAGSVGKLRQ MVVEGEISSR
EFFEAILSQT DALEAAFEQT VPTISQAFGV LGNNFTMFIG QMDAATGASG VVAEAILMVA
DNLNTVAGIA VSAGVAVATA YAPAIWGAVK ATGAWVASLV TLRGALLATG VGALVVGAGV
LIGKFLDLVR ATGGWGNALE ILGDVASGVW DGIKTSASAI VPALGALWAD MHARFVRVLQ
DMSLAWGNFL WSLGARLDGV PFFESVAQGL KNASDSAIDS MIELDAKASG LEGTAIRLRK
EASGLVSEGF DKAAEAAGKL RAQLEGTAGA TDTGADAAGE LNDALRELEK GGAKAGRGLE
RVKSEAEAFA EAMEDAAFTT EDFGKDKAGI LIGGIDGISG AWGDFVSRGF SDFKGFVKNV
LSSFAGMLSQ MIAMSARNRI MIGLGFGGVS GGVAQAAAEG GSGLLGNVLG LGSGGAFSGA
VSGISSGLGG VLSGGGLGSS FANLGGLVTG SVGGWGAVGA ALPALGAVAA AVSFFTTKTK
HLDNGLRVTA DNMGTLVEEF DKVQKSRFWG LSKKVSLTFE EADEATAAPI RKSIEDITTS
IGAAGARLGL TADNFSSWST QIQVSLKGLD EAARNAEIQR IFDTVADQFS YAALGSFNEA
MGGRLIREGE DAAATLDALV SSITSANQAM DLLNGAMFET SVYGADMARQ LIDAAGGLDT
FNASVNSYFT SFYSQEEQLA SRTGLLADQF EALNVAMPAT KEAFRDLVEA QDLSTEEGRA
LYAGLLNLSG EFANLSQLSE ELYGSASLAA SGISALVRSF SSDVLGAEDE LADAQATALV
EYNNVMRIMD LQIRSAQSAR DSIKGIFDIL SDGLDARTPL ELEAQRLQRE RLKAELSAGI
DDPQRLREVV QGLNAPAEQF FSTYADFAYD YARTSALMDE QKGIAEEQLT EAEQQLRALE
NQKRAVEELY GPLLGIDQNT DNLEEAMERL ETAMLGVEAA MLRVEDSMYA LAQALLSAVS
GIGGTGGLMG MGRDAFDQFS FDRTNGILSD QGAGVLDGVA AQINGLYQDV FGRNVDVAGL
DFYGDLLQSG QVKAGRIQYD LMTSGEAQTG VTPGFGNIGS AAQPVDPVEA LYGSMLGRAA
DPAGVEFWKS TGLQGEALIS AFRDGALAAG DTPSFDGGGY TGSGPRVGGL DGKGGFLAML
HPRETVIDHT RANRSGGQAE VDSSAVVQEL RKIGDRLAVL ESHARATTYN TGKSMRTHTK
WDRDGVPKER T
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