Gene TM1040_0789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0789 
Symbol 
ID4076061 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp841219 
End bp841935 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content57% 
IMG OID638006087 
Productputative phage repressor 
Protein accessionYP_612784 
Protein GI99080630 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000233571 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTCCTT ATAGGGACAA TACTCCCCAT CTTGCAAGGG ACAATCATCT CCTATTCACG 
GAATTGGCTA GGGACTATTG TCTCTCCATG CCAATTTCTT TCAAAGAAGC CCTAGACCGC
GCACAGGATG CCACCGGCCT CTCCATGAGG AAGCTGGCTG ATAAGGCAGG TGTTTCTTAC
GAGCAGCTCA AAAAAGTTCG GCAAGGGAAA AGCCAAACGA CCAACGCCGA GGACGCCCTA
AAAATCGCTA CAGCGGTAGG CGTCTCTTTC GAGCAGTTTA TGTCCGGAGA GTTTGATGCA
TCGCCCACCA TTTCGATCGC GGGGAAAGTA GGTGCTGGCG CCCAGGTACC GGTGTTCGAC
GCCTACGAGA AAGGCGATGG CCCACAGGTC GAATGTCCAC CGGGCATTGG GCCGCACGGC
GTTGTAGCAG TCGAGGTCGA GGGTGACAGC ATGGAGCCGG TATATTCCGC CGGGGATCTA
CTGTTCTACT CTCGCAATGG GCATGACAGC GTTCCTGACG ACGTGATCGG CTACAAGTGC
GTTTGCGAGG ATGCGGACGG CATGGGCTGG GTGAAGCAAG TCAAAGCGGG TGATGAGCCG
GGGCTGTTCC ACCTGATCTC GCTCAACCCC ACCGGTGCAA ACATGTGGAA CGTGCGCCTA
AAGTGGGCCG CCCGCGTGCG ACTGCACTGG CCTGCGGAGT TTGCGAGGAA GAAATAG
 
Protein sequence
MTPYRDNTPH LARDNHLLFT ELARDYCLSM PISFKEALDR AQDATGLSMR KLADKAGVSY 
EQLKKVRQGK SQTTNAEDAL KIATAVGVSF EQFMSGEFDA SPTISIAGKV GAGAQVPVFD
AYEKGDGPQV ECPPGIGPHG VVAVEVEGDS MEPVYSAGDL LFYSRNGHDS VPDDVIGYKC
VCEDADGMGW VKQVKAGDEP GLFHLISLNP TGANMWNVRL KWAARVRLHW PAEFARKK