| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0664 |
|---|
| Symbol | |
|---|
| ID | 4078177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 709699 |
|---|
| End bp | 710691 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005961 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612659 |
|---|
| Protein GI | 99080505 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCACGT TGCGACCGCG GCTTTTGCGC TTGCCTTTGG GCGAGCCAGA GCGCACCGAT
GACGCCATGA CCCATGAGAC CCCACAGAAC CCACCCCTTG CCGCGGCGCT GATCCTGCTG
GCCACCGTGT TCATCGCCGG CACCACGTTG CTGGCAAAAT CACTTGGCAC AGAGGTGCTT
GCCCCCCCTT TGCACGCCTT GCAGATCAGT CAGGGACGGT TTGTTTTTGC CTTTATCGGG
ATCTCCGCCG CCGTGGTGGT TCTGCGCCAG AAGATCCACA CGCCGCATTG GGGACTGCAT
ATCGGGCGGT CGTCTTTTGG ATGGGGCGGC GTCACGCTGA TGTTTGCCTC TGTGGCCTTT
ATTCCTCTGG CGGATGCGAC AGCGATCTCT TTTCTCAACC CTGTGATCGG CATGATCCTC
GCAATCCCTT TCCTGGGTGA AAAGGTCGGG CCCTGGCGTT GGCTGGCGGC AGCGATCGCG
CTTCTGGGGG CTATGGTTCT TTTGCGACCG ACACCTGCGA GTTTCCAGCC AGCGGCGCTG
CTTGCATTTG GGGCGGCGCT TGCGATGGGC GCAGAACTGA TTTTTATCAA GACCCTCGCA
AGGCGCGAGC CACCATTGCA GATCCTGTGG GTGAATAACT TGATCGGTAT GGTCATTGCC
TCAACGGCAG CATTGGCCGT TTGGCAGATG CCAACGCCCG CTCAATGGGC GGCCCTTGTG
GCGCTTGGGG CGTTGATGGC CTGCGCGCAG GCGTGTTTTG TCAATGCGAT GGCGCGGGCG
GACGCCTCGT TTGTGGCTCC CTTCGCCTAT GCCACATTGG TGTTTGCCGC ACTCTATGAT
GCGCTGATCT TTGGAGTTTT GCCTGACTGG GTCACGGTCT TGGGGGCTGG CATCATCCTC
TCTGGAGCGG GGTTGCTTGC CTGGCGCGAG AGCGTCAACG GCAAGCGTCC CCTGGTGACA
GAGCCCCTGC CCCGCAGCGA CACCGTGCTC TAG
|
|---|
| Protein sequence | MGTLRPRLLR LPLGEPERTD DAMTHETPQN PPLAAALILL ATVFIAGTTL LAKSLGTEVL
APPLHALQIS QGRFVFAFIG ISAAVVVLRQ KIHTPHWGLH IGRSSFGWGG VTLMFASVAF
IPLADATAIS FLNPVIGMIL AIPFLGEKVG PWRWLAAAIA LLGAMVLLRP TPASFQPAAL
LAFGAALAMG AELIFIKTLA RREPPLQILW VNNLIGMVIA STAALAVWQM PTPAQWAALV
ALGALMACAQ ACFVNAMARA DASFVAPFAY ATLVFAALYD ALIFGVLPDW VTVLGAGIIL
SGAGLLAWRE SVNGKRPLVT EPLPRSDTVL
|
|---|
| |