| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0563 |
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| Symbol | |
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| ID | 4077914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 599575 |
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| End bp | 600474 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005860 |
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| Product | RNA polymerase factor sigma-32 |
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| Protein accession | YP_612558 |
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| Protein GI | 99080404 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.939582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0697509 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAATT ATGCAAACCT TCCCGCCCCG TCTCCCGAAG GCGGACTCAA TCGGTATCTG
CAGGAAATTC GCAAGTTCCC GCTTCTGGAG CCGGAAGAGG AATACATGCT GGCCAAGAGA
TGGGTCGAAG AGCAGGACAC CGAAGCCGCG CACAAGATGG TAACATCGCA TCTGCGACTG
GCAGCAAAAA TTGCCATGGG ATACCGGGGT TACGGGTTGC CTCAGGCAGA AGTCATTTCT
GAAGCTAATG TTGGTCTGAT GCAGGCGGTA AAGCGGTTCG ATCCGGAAAA AGGCTTCCGT
CTGGCAACCT ATGCGATGTG GTGGATCCGC GCCTCCATTC AGGAGTATAT CCTGCGGTCC
TGGTCGCTGG TGAAGCTTGG GACCACATCT GCGCAGAAGA AGCTGTTTTT CAATCTGCGC
AAAGCCAAGG CCCGGATCGG TGCACTTGAG GATGGAGATC TGCGGCCCGA AGTGGTGAAG
AAGATCGCCA CAGATCTTGG CGTGACCGAG GATGAGGTGA TCTCCATGAA CCGACGTATG
TCGGGCGGCG ATGCGTCGCT CAATGCCATG GTGGGCAGCG ACGGTGACAG CACCATGCAG
TGGCAGGATT GGCTCGAGGA TGAGGACGCC GATCAGGCGG GAGATTACGA GGCCCGTGAC
GAGCTGCAAG CGCGCCGGGA GCTTCTCGCC GAGGCCATGA GCGTCCTCAA CGATCGCGAG
AAAGACATTT TGACCCAGCG TCGTCTGGCC GAGCAGGCCA AGACGCTTGA AGAGCTGAGT
GTCCAATATG ATGTGAGCCG GGAGCGCATT CGCCAAATCG AAGTGCGCGC CTTTGAAAAG
CTACAGAAGA AAATGCGCGA GCTCGCGGCT GGCAAGGGGA TGCTGCAGTC GAAGCTCTGA
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| Protein sequence | MANYANLPAP SPEGGLNRYL QEIRKFPLLE PEEEYMLAKR WVEEQDTEAA HKMVTSHLRL
AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KRFDPEKGFR LATYAMWWIR ASIQEYILRS
WSLVKLGTTS AQKKLFFNLR KAKARIGALE DGDLRPEVVK KIATDLGVTE DEVISMNRRM
SGGDASLNAM VGSDGDSTMQ WQDWLEDEDA DQAGDYEARD ELQARRELLA EAMSVLNDRE
KDILTQRRLA EQAKTLEELS VQYDVSRERI RQIEVRAFEK LQKKMRELAA GKGMLQSKL
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