| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0545 |
|---|
| Symbol | |
|---|
| ID | 4077192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 578562 |
|---|
| End bp | 579359 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005842 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_612540 |
|---|
| Protein GI | 99080386 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGGG GGGAACTCAA CGAGCGCCGG GATGCGATTA TTCGGTTGTT GTGCGCACAA
GACGAGTTGT CCGCGCAGGA TCTGGCCGCG CGGCTGAATG TGTCTGTCCA GACCATTCGC
ACCGATTTGC GAGAACTCGA TGAGGCGGCC CTGGTGCAAC GTCGCCACGG CAGGGTCCGG
CTTCGGCAGC CCTCGGAGAA CATCGGCTAC GCCCCGCGGA TGAGTGTCGC GCGCAGCGAA
AAGCAACAGA TCGCGATGGC GGTAAAACCG ATGATAGAAG ATGGTAGCCG TGTTGCTTTG
GGCACGGGGA CCACGGTCGA GGCCTGCGCG CGTCAGCTGG CCGCCAGCCA TAGGGACCTC
TTTGTTGCCA CCAACAACAT TCACGCGGTG ATTGCGCTGC AAGGGGCAAG CGGGGTCTCG
GTATCGCTTG CCGGGGGGGC GGTGCGGCTG CGCGATCTGG ATTTTGTCGG CGCTGCGAGT
CGCGCGTTTT TTGCCGACTA CATGGTCGAC ATCGCGATTT TTAGTTGCGG CGGTCTTTCC
CTTTCCGGGG ATGTTTTGGA CTACAACACG GATGAGATCG CCGCGCGTGA GGCGATTTCA
ACCTGCGCCA CGCGCCGGGT TCTGGTCGTG GATCGAGAAA AATTCGGGCG TGCTCTACCG
TGCCGAAAAC ACATGATCTG GGACTATGAC GTGGTGGTCA CGGGGGCTGA TTTTCCTCGG
GAAATCATGC GCAAATGCCA AGAAGCCGGG TGCGAGGTTC TGCGTGTCGC CACAGATGAA
CGCCCGCTGC GCGCCTGA
|
|---|
| Protein sequence | MRRGELNERR DAIIRLLCAQ DELSAQDLAA RLNVSVQTIR TDLRELDEAA LVQRRHGRVR
LRQPSENIGY APRMSVARSE KQQIAMAVKP MIEDGSRVAL GTGTTVEACA RQLAASHRDL
FVATNNIHAV IALQGASGVS VSLAGGAVRL RDLDFVGAAS RAFFADYMVD IAIFSCGGLS
LSGDVLDYNT DEIAAREAIS TCATRRVLVV DREKFGRALP CRKHMIWDYD VVVTGADFPR
EIMRKCQEAG CEVLRVATDE RPLRA
|
|---|
| |