| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0511 |
|---|
| Symbol | |
|---|
| ID | 4077217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 537112 |
|---|
| End bp | 538005 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005807 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_612506 |
|---|
| Protein GI | 99080352 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.252109 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAC TTGGCATAGA TCATCCGCTT GTCTGTGTGC GCGATCTGGC CGCGAAGCGC
GCGACGTATC AAAGCCTCGG CTTTTTGATG AAGCCCCCGG GGATGCACCC TTGGGGCACC
TCGACGGCGC TGGTGATCTT TCGAAACCAG CTTCTTGAGC TGGTCAGTAT TGAGGATGAG
AGCCTGCTGG ATGGCTATGC AGCGGGATCA TTCCGCTTTG GCCGTCATGT CGAGGCGTGG
CTGGCAGAGC GCGAAGGGGT CTGCCTTTCT GCACTCAATT CAATGGATGC TGAGGCGGAT
GAGGCAGCAG TGCTGGCGCG CGGTGGCAGC TGTGCTGGCA CGGTTGAATT CGGGCGCGAC
GTGGTGCGCG ATGATGGCAC GCCGGATCGT ACCAAGACCA CGCTCAAGAT TTTCCCGCAT
GCGGGGTTGC CGCGCCTCAG CATGTTTGCC TGCCAGCAAC ATCGCCGCGA CCTGATCGAG
TTTCCTGATT GGATGGATCA TCCCAATGGG GCACATGGCT TTGCCTCTGC GACCATCCTT
GCCGCGCCTT CGGATCAGGG CAGGGTGCGC GATTGGCTGT CCGTGCTCCA CGGAGCTGAC
GCGGTACGGG ACACCGACTG GGGATTTGAG GTTGCAACAA CCAATGGGCG GTGGCGCGTG
GTTAGCCGGG CCACCGCGCC TGCGCTCTTG GGAAAGCTGC CCGACGGGCT CGCGTCCGAT
GGCGCGCCAT CGGTGATCTC GCTCGACATA CGCTGCCATG CGCTGTCACA GCTTCGCCCC
TTCGTCGAGG CAGGAGAGTT CGTCTGCCAG GACGTCAATG GGGCCTTGGT GCTGACAGAG
GTTGCGCGTC TGGGTGGCAT CCTTCTGAGT TTTCACGAAA TACCAAAGGT TTGA
|
|---|
| Protein sequence | MTTLGIDHPL VCVRDLAAKR ATYQSLGFLM KPPGMHPWGT STALVIFRNQ LLELVSIEDE
SLLDGYAAGS FRFGRHVEAW LAEREGVCLS ALNSMDAEAD EAAVLARGGS CAGTVEFGRD
VVRDDGTPDR TKTTLKIFPH AGLPRLSMFA CQQHRRDLIE FPDWMDHPNG AHGFASATIL
AAPSDQGRVR DWLSVLHGAD AVRDTDWGFE VATTNGRWRV VSRATAPALL GKLPDGLASD
GAPSVISLDI RCHALSQLRP FVEAGEFVCQ DVNGALVLTE VARLGGILLS FHEIPKV
|
|---|
| |