| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0488 |
|---|
| Symbol | |
|---|
| ID | 4078526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 511342 |
|---|
| End bp | 511809 |
|---|
| Gene Length | 468 bp |
|---|
| Protein Length | 155 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005784 |
|---|
| Product | calcium-binding EF-hand |
|---|
| Protein accession | YP_612483 |
|---|
| Protein GI | 99080329 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0133587 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.146102 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCAGC CCCTCCCTTC CTTTGTCGCG TCTGCACCAT CAGGGCCACG CGTTTTGACG
CTGGCCATAC TCTGTCTGGT TGCCACCCTC GGCGCGCAGA CGGCAGGAGC AGATCCGGAT
TTTCTGGCGA GCCTCGATTT TGATGGCGAT GGCGCGGTGA CGGTGAGCGA AGTCGCCCTG
GTGCGCAATC AGAAGTTCGA GCAGATCGAC CGGGACGGCG ATGGGTTTAT CGATGCGGAC
GAGTTTGATC GCTCGCTTCA AGAGACCAGA ACCCGCTTCC GCCAGATGGG TCAGGGCTAT
GAGGAGCACA GGGCCAGCCC CGGCCGGATT GACGCCTTCA CTTTTGCCGA CTCGGATGCG
GATGGCCTGA TCTCGAGGCG GGAGTTTCAC CGCCATTCCG ACCGCTTCGC TCAGAGCCTT
GATCGGGACG GCGATGGCAT CGTTTCGGAT AGGGATATGG CACGCTAG
|
|---|
| Protein sequence | MAQPLPSFVA SAPSGPRVLT LAILCLVATL GAQTAGADPD FLASLDFDGD GAVTVSEVAL
VRNQKFEQID RDGDGFIDAD EFDRSLQETR TRFRQMGQGY EEHRASPGRI DAFTFADSDA
DGLISRREFH RHSDRFAQSL DRDGDGIVSD RDMAR
|
|---|
| |