| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0444 |
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| Symbol | |
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| ID | 4076087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 460262 |
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| End bp | 460948 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005740 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_612439 |
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| Protein GI | 99080285 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATC AGAACCAATC TCCTTTTAAC GCCCTGCCGC CAGTGGTGGT GGCTTTGGTG
ATCGTGATCA TCGGTATCGA GGCAATGTTT TCCTTCGGCG CCCGCGGCTA CATCGGTGGC
CCGGAGGCGG TGGGCTGGCG GCTGAACGCC CTGCAGGAAT ACGGTTTTGG CGCGCAGTAT
TTCTGGTGGA TGTGGGAAAA CGGCACCTGG CCCTTTGATC TGCTGAAGCG TTTTGTCACC
TACGCCTTTG TGCACGGGGC CTTTACCCAG GCAGTTTTTG TCTGCGTGTT CCTTCTGGCC
ATGGGCAAGA TGGTAGGCGA AGCCATGGGT GAGATCGCCG TGGTGCTCAT CTTTATCGGC
TCTGCCATCG GAGGGGCCTT GGCCTATGCG CTGCTGGTCG GCGGCAATGT GGCCCTGTTC
GGGGGCTTTC CGGCGGTCTA CGGGTTGATC GGCGGCTTTA CCCATCTTTT GTGGCTATCA
CTTGCGACCG TCGGCGCGCA GCAATACCGC GCCTTCACGC TCATTGCGTT CTTGATGGGG
GTGCAGTTGC TCTTTGGTCT GATTTTTGGC GGCAGCCCGG AGTGGGTTGC CGATCTTGCG
GGCTTTGTCA CCGGGTTTGT GATGTCGTTC TTTCTGGTGC CCGGTGGTTG GGCCCGCATC
CTGCAGAAAC TGCGTCAGGA CCGGTGA
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| Protein sequence | MQDQNQSPFN ALPPVVVALV IVIIGIEAMF SFGARGYIGG PEAVGWRLNA LQEYGFGAQY
FWWMWENGTW PFDLLKRFVT YAFVHGAFTQ AVFVCVFLLA MGKMVGEAMG EIAVVLIFIG
SAIGGALAYA LLVGGNVALF GGFPAVYGLI GGFTHLLWLS LATVGAQQYR AFTLIAFLMG
VQLLFGLIFG GSPEWVADLA GFVTGFVMSF FLVPGGWARI LQKLRQDR
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